Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Mitogen-activated protein kinase kinase kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11582 g11582.t6 isoform g11582.t6 17322310 17322697
chr_1 g11582 g11582.t6 exon g11582.t6.exon1 17322310 17322497
chr_1 g11582 g11582.t6 cds g11582.t6.CDS1 17322311 17322497
chr_1 g11582 g11582.t6 exon g11582.t6.exon2 17322567 17322697
chr_1 g11582 g11582.t6 cds g11582.t6.CDS2 17322567 17322697
chr_1 g11582 g11582.t6 TSS g11582.t6 17323103 17323103
chr_1 g11582 g11582.t6 TTS g11582.t6 NA NA

Sequences

>g11582.t6 Gene=g11582 Length=319
ATGTCCGAAATAAATAATGAACTAGTTTATGGAAACTATTCGCTTCTTGACAATCATCAA
GAGTCACCTCTCTATACTGCGAAATATGACTATTCAGCACAAGGTGAAGATGAATTGGAT
TTAAAAGTCGGTCAAATTGTATGGGTTTTATCAAAAGATGAATCAATATCAGGAGATTAT
GGTTGGTGGACTGGAAAAATTGGTGATCGAGTTGGAATATTTCCTGCAAATTATGTTACA
AATGACGATTTAATGCTAAAAGATGCACATCCTAGTGAAATCGATTACGATGAATTGGAT
GTAAAAGAAGTTATTGGAG

>g11582.t6 Gene=g11582 Length=106
MSEINNELVYGNYSLLDNHQESPLYTAKYDYSAQGEDELDLKVGQIVWVLSKDESISGDY
GWWTGKIGDRVGIFPANYVTNDDLMLKDAHPSEIDYDELDVKEVIG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g11582.t6 Gene3D G3DSA:2.30.30.40 SH3 Domains 20 83 0.000
2 g11582.t6 PANTHER PTHR44329 SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 18 106 0.000
3 g11582.t6 PANTHER PTHR44329:SF35 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 9 18 106 0.000
4 g11582.t6 PRINTS PR00452 SH3 domain signature 23 33 0.000
6 g11582.t6 PRINTS PR00452 SH3 domain signature 37 52 0.000
7 g11582.t6 PRINTS PR00452 SH3 domain signature 59 68 0.000
5 g11582.t6 PRINTS PR00452 SH3 domain signature 70 82 0.000
1 g11582.t6 Pfam PF00018 SH3 domain 26 76 0.000
11 g11582.t6 ProSiteProfiles PS50002 Src homology 3 (SH3) domain profile. 20 84 24.882
9 g11582.t6 SMART SM00326 SH3_2 23 83 0.000
8 g11582.t6 SUPERFAMILY SSF50044 SH3-domain 21 86 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed