Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11590 g11590.t8 isoform g11590.t8 17377828 17380714
chr_1 g11590 g11590.t8 exon g11590.t8.exon1 17377828 17378237
chr_1 g11590 g11590.t8 cds g11590.t8.CDS1 17377830 17378216
chr_1 g11590 g11590.t8 exon g11590.t8.exon2 17380341 17380714
chr_1 g11590 g11590.t8 TSS g11590.t8 NA NA
chr_1 g11590 g11590.t8 TTS g11590.t8 NA NA

Sequences

>g11590.t8 Gene=g11590 Length=784
GCTTTGAAATGCGGGCAAAAAAGAAAGATTTGAGATTTGACGAAAAAAATGAAAAAAAAA
ATGTGAAGACGACTTTATTAATTTGAAGGTGTATTAGCATTTAAAAAAAATAAAAAAATT
AGAAGTTAATAAAAATTTAGAAAATCATACACTTATGGCGAATTAAAACTTTTTATTACT
TTAAAAATTATTTCGTGAAAATTACCGTTTTTTATTACAAAAATATTTATTAAAAAGAAT
AGTGGAATAAACACAAAACACAAACTCACAAATTACAAAGGAGAAAAATTGATTTTTTTT
ATCATCCTCAATTTTATATAGGTACTATAACAAAGTGAAAAAACCAAGTGCTTGATAAAT
AATAAATCAGGTTATTACAACGTTTGGGATATAAAATGTCGCTTCGACATTCAAGCTCCC
TAAATAATGTTCGTCAATCATCTAGTCTGAAGATGAAAAGTTCAAAATCTTCACCAAATG
GTTCTCTTTCTTCGGAAAGCTCTGGTAGCATTACTGAAAAAGAGCGTTTAAAGAGAGAAC
GAGAAAGCATTAAACTCTGGATTCATCCAGTTTTGACGATCAAATATTGTTTCTTTGAAG
TAGCAACTCTTTTTCAAATTTATAAGCGTAGCATATTAAACCATAAAAAGACCATAGGAT
TTGTTATGACATTGCTAATAGCATTTTTTACGCTCTGGTATATACCTGGAAAGCATCAAA
TTTACGTTGAATTTATAAGAAAAAATGCATTCTTCGTAACATATTGGATTGGTTTGGGTG
TAAT

>g11590.t8 Gene=g11590 Length=129
MSLRHSSSLNNVRQSSSLKMKSSKSSPNGSLSSESSGSITEKERLKRERESIKLWIHPVL
TIKYCFFEVATLFQIYKRSILNHKKTIGFVMTLLIAFFTLWYIPGKHQIYVEFIRKNAFF
VTYWIGLGV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g11590.t8 MobiDBLite mobidb-lite consensus disorder prediction 1 44 -
4 g11590.t8 MobiDBLite mobidb-lite consensus disorder prediction 1 38 -
5 g11590.t8 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 53 -
9 g11590.t8 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 54 75 -
7 g11590.t8 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 76 86 -
8 g11590.t8 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 87 105 -
6 g11590.t8 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 106 129 -
1 g11590.t8 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 54 76 -
2 g11590.t8 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 86 105 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed