General information for g11591.t43
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative 60S ribosomal protein L22.
Parent gene
- The parent gene g11591 is located on chr_1: 17381479..17381802 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11591 | g11591.t43 | isoform | g11591.t43 | 17381187 | 17381704 |
| chr_1 | g11591 | g11591.t43 | exon | g11591.t43.exon1 | 17381187 | 17381382 |
| chr_1 | g11591 | g11591.t43 | TSS | g11591.t43 | 17381188 | 17381188 |
| chr_1 | g11591 | g11591.t43 | cds | g11591.t43.CDS1 | 17381206 | 17381382 |
| chr_1 | g11591 | g11591.t43 | exon | g11591.t43.exon2 | 17381441 | 17381704 |
| chr_1 | g11591 | g11591.t43 | cds | g11591.t43.CDS2 | 17381441 | 17381704 |
| chr_1 | g11591 | g11591.t43 | TTS | g11591.t43 | 17381807 | 17381807 |
Sequences
>g11591.t43 Gene=g11591 Length=460
AGATATAGCTTATAGCAACATGGCAATTGCTAAGAAAATTGATCCAGCCTCAGCCAAGTC
AAAGACCACTGGCAAAGCTATTCAGAAGAAACAAACTCTACGAGGAAAGAGTTTGAAAAA
GAAGAAAGAACATCTTCGTTATGGAATTGACTGCACAAACATTGCAGAAGACAACATTTT
GGATGTGGCTGATTTTAAATTCTTGAAAGAACGCTTTAAGGTCAATGGAAAAACTGGAAA
TTTGGGCAATAATGTCTCGATGGAGAGACAAAAATTCAAAATTTACGTCAGCTCAGATAT
TCACTTTTCAAAACGTTATTTGAAGTATTTGACAAAGAAGTACTTGAAGAAACACAGTCT
TCGTGATTGGATTCGTGTTGTCTCAAATGACAAGGATTTATATGAATTGCGCTACTTCAG
AATCGGATCTAATGATGATGATGAGGAAGAAAACGAATAA
>g11591.t43 Gene=g11591 Length=146
MAIAKKIDPASAKSKTTGKAIQKKQTLRGKSLKKKKEHLRYGIDCTNIAEDNILDVADFK
FLKERFKVNGKTGNLGNNVSMERQKFKIYVSSDIHFSKRYLKYLTKKYLKKHSLRDWIRV
VSNDKDLYELRYFRIGSNDDDEEENE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g11591.t43 | Gene3D | G3DSA:3.30.1360.210 | - | 27 | 146 | 5.7E-48 |
| 4 | g11591.t43 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - |
| 2 | g11591.t43 | PANTHER | PTHR10064 | 60S RIBOSOMAL PROTEIN L22 | 9 | 144 | 1.9E-56 |
| 3 | g11591.t43 | PANTHER | PTHR10064:SF0 | 60S RIBOSOMAL PROTEIN L22-RELATED | 9 | 144 | 1.9E-56 |
| 1 | g11591.t43 | Pfam | PF01776 | Ribosomal L22e protein family | 36 | 142 | 4.3E-42 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005840 | ribosome | CC |
| GO:0006412 | translation | BP |
| GO:0003735 | structural constituent of ribosome | MF |
KEGG
Orthology
- This transcript has been annotated with K02891 (large subunit ribosomal protein L22e)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed