General information for g11599.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Dihydroxyacetone phosphate acyltransferase.
Parent gene
- The parent gene g11599 is located on chr_1: 17408847..17410315 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11599 | g11599.t1 | TSS | g11599.t1 | 17406608 | 17406608 |
| chr_1 | g11599 | g11599.t1 | isoform | g11599.t1 | 17406684 | 17408847 |
| chr_1 | g11599 | g11599.t1 | exon | g11599.t1.exon1 | 17406684 | 17407352 |
| chr_1 | g11599 | g11599.t1 | cds | g11599.t1.CDS1 | 17406684 | 17407352 |
| chr_1 | g11599 | g11599.t1 | exon | g11599.t1.exon2 | 17407421 | 17408658 |
| chr_1 | g11599 | g11599.t1 | cds | g11599.t1.CDS2 | 17407421 | 17408658 |
| chr_1 | g11599 | g11599.t1 | exon | g11599.t1.exon3 | 17408718 | 17408847 |
| chr_1 | g11599 | g11599.t1 | cds | g11599.t1.CDS3 | 17408718 | 17408847 |
| chr_1 | g11599 | g11599.t1 | TTS | g11599.t1 | NA | NA |
Sequences
>g11599.t1 Gene=g11599 Length=2037
ATGGCAACATCAAATAGTAAGAAGTATTTGGAAAATTATCATAATTACTTGGATAAGAGA
GTCACGTTATTCACTAAACCATTTGATCCTTTAATTCCTATCAAAAGAAATAGACGCGTT
CTACCTGAAGAATTAAAATTTCGTGTCTTAAAAAGTCAACATTTTAACAATTATCTTGAT
AAAATATCTGACAATAAAAATGATCGCCAGCAAAAAGAAACTGAAGCTATGCAAATTCTC
ACTGAAATTGGATTTGATCGAAAAATTCTAGTTATTCGTTCATTAGGAACTGTAATTGAT
AAATTAATGGCTCAATTATATAAAAATGTATTTATAAATGAACAGAGCATAGAGCGATTA
AAGGCAATTATGGGAAGACAACAAATCATATACTTACCTTCCCATCGATCGTATGTTGAT
TTCATGCTCATGTCTTATGTTTGCTTTTCTTACAATCTCGAAATACCCGCGATTGCTGCG
GGAATGGACTTCCATAGTATGTTTGGTCTCGGAGAACTATTGAGAAAAACTGGTGCATTT
TTTATGCGTAGAACATTCGGAGATGAATTTTATTGGAATATATTTAAAGAATACATGCAT
GAAATAATAACATACAATGATTTTGGTGTTGAATTTTTCATTGAGGGCACAAGAAGCAGA
ACTTGCAAAGCTCTTTGGCCAAAAACTGGACTTTTATCAATGGCGCTAGAACCGTTTTTC
ATGGGTGAAATTTATGATATAAAGGTTGTTCCAACATCAATCTCTTATGAAAAAGTATTA
GAAGAACAGCTTTTCGTTTACGAACTTTTGGGCATTCCAAAACCTAAAGAAAGTACAAAA
GGATTCTTTAAAGCTGTAAAAAATTTGATTGATAAAAATTATGGCAATATGTACTTTGAT
TTTTGTGAACCCATATCATTAAATGATTTTTTGGGTAACAAAGTCGACAGATTTAGACAC
GCTTCTGAGCCGGCTCATATTCAAAAATTGAACAATGATGAACTTGTATTAATAACTGAT
TTTGCACATCATGTTATTCGTGAACAACAAAAGAAAATAGTCATTAGCACCTATAATTTA
ATTGCATTAATCTACAATCAATATGTTTTTCTCAATTCAACTGAATCTTTAACAATTAAT
GTATTGCAAAATGAAATCGAACTGTATTTAAAATTTTTTGAAGTATTAGGAGCGATCGTT
GCTATAGATGATACTAATCTCATTAAAAGTATTCATGAAGCCATGCAAATACATGATAAT
ATACTCGAGATAGTTGGAGAAAAAAGTATTCGTTTAAAAAAAGCAAACACTTTGGCTACC
AGGCAAAATAATGGATTGAAATTAAAAGGTCACTGGTTATGCAAAGAAATGATGGATATT
GCTGTTCCCGTTTTTTCATTACAATTATATTGCAATCCGACGATGTTCTGGCTTTCACAG
CCTGCAATTTTCGTTTTCTCACTTATTGGTCGGCAAAATGTGAAAATTGAATGGCTGAAA
AAAAGTGTCATGCATTTAAGGAATATCTTTATTTACGAGCTAGTATTATATCCACGTTTT
GCTGATGAAGATTTTGAAAAAACATACGCTTTATTGGAAAAATTGCAAATTATATGCAAA
ATTGATGATGAAACAGTTTCTCTAACACATTCGCCATACATAAACATTTTGTTAAGTGCA
ATCTCTCCTTTTTTCAACAGTTACTTGCAAACAACTCAAATTATTTTTAATAACTTTAAA
GAAAAAAAGTTTGCATCTAAAGAAATTTTTATAGCTGTACAATCAATCTTGGAACATGAA
ATGTTGAAAGGAAATTTTTCTATTCACCCATATGCCCTATGTTTAGAAACAATTACCACT
ACACTTTTATCTCTTTGTAATATAGGATGTCTTTTCAAAGAGAAACAGGATTCTGTTAAT
CAATATAGTGTACATGCTGAAAACATGTCTTCACTTGTCGATGAACTCAAGCAATACAAC
TCTAATCTTACCTTCGTTTACAAATATTTCAATACGCTTATTTCATCAAAAATATAA
>g11599.t1 Gene=g11599 Length=678
MATSNSKKYLENYHNYLDKRVTLFTKPFDPLIPIKRNRRVLPEELKFRVLKSQHFNNYLD
KISDNKNDRQQKETEAMQILTEIGFDRKILVIRSLGTVIDKLMAQLYKNVFINEQSIERL
KAIMGRQQIIYLPSHRSYVDFMLMSYVCFSYNLEIPAIAAGMDFHSMFGLGELLRKTGAF
FMRRTFGDEFYWNIFKEYMHEIITYNDFGVEFFIEGTRSRTCKALWPKTGLLSMALEPFF
MGEIYDIKVVPTSISYEKVLEEQLFVYELLGIPKPKESTKGFFKAVKNLIDKNYGNMYFD
FCEPISLNDFLGNKVDRFRHASEPAHIQKLNNDELVLITDFAHHVIREQQKKIVISTYNL
IALIYNQYVFLNSTESLTINVLQNEIELYLKFFEVLGAIVAIDDTNLIKSIHEAMQIHDN
ILEIVGEKSIRLKKANTLATRQNNGLKLKGHWLCKEMMDIAVPVFSLQLYCNPTMFWLSQ
PAIFVFSLIGRQNVKIEWLKKSVMHLRNIFIYELVLYPRFADEDFEKTYALLEKLQIICK
IDDETVSLTHSPYINILLSAISPFFNSYLQTTQIIFNNFKEKKFASKEIFIAVQSILEHE
MLKGNFSIHPYALCLETITTTLLSLCNIGCLFKEKQDSVNQYSVHAENMSSLVDELKQYN
SNLTFVYKYFNTLISSKI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g11599.t1 | CDD | cd07993 | LPLAT_DHAPAT-like | 107 | 312 | 0 |
| 2 | g11599.t1 | PANTHER | PTHR12563 | GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE | 4 | 658 | 0 |
| 3 | g11599.t1 | PANTHER | PTHR12563:SF17 | DIHYDROXYACETONE PHOSPHATE ACYLTRANSFERASE | 4 | 658 | 0 |
| 6 | g11599.t1 | PIRSF | PIRSF000437 | GPAT_DHAPAT | 27 | 672 | 0 |
| 1 | g11599.t1 | Pfam | PF01553 | Acyltransferase | 122 | 254 | 0 |
| 5 | g11599.t1 | SMART | SM00563 | plsc_2 | 129 | 257 | 0 |
| 4 | g11599.t1 | SUPERFAMILY | SSF69593 | Glycerol-3-phosphate (1)-acyltransferase | 108 | 316 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0044255 | cellular lipid metabolic process | BP |
| GO:0016746 | acyltransferase activity | MF |
| GO:0008374 | O-acyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00649 (glyceronephosphate O-acyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
