General information for g11599.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Dihydroxyacetone phosphate acyltransferase.
Parent gene
- The parent gene g11599 is located on chr_1: 17408847..17410315 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11599 | g11599.t2 | TSS | g11599.t2 | 17404974 | 17404974 |
| chr_1 | g11599 | g11599.t2 | isoform | g11599.t2 | 17404999 | 17407479 |
| chr_1 | g11599 | g11599.t2 | exon | g11599.t2.exon1 | 17404999 | 17405065 |
| chr_1 | g11599 | g11599.t2 | exon | g11599.t2.exon2 | 17406675 | 17407352 |
| chr_1 | g11599 | g11599.t2 | cds | g11599.t2.CDS1 | 17406684 | 17407352 |
| chr_1 | g11599 | g11599.t2 | exon | g11599.t2.exon3 | 17407421 | 17407479 |
| chr_1 | g11599 | g11599.t2 | cds | g11599.t2.CDS2 | 17407421 | 17407477 |
| chr_1 | g11599 | g11599.t2 | TTS | g11599.t2 | NA | NA |
Sequences
>g11599.t2 Gene=g11599 Length=804
AGTGCACTGAAAAGAATACATTCCTTTAAATTTTCTTTGAAATGACTGTTGTTTCATTCT
AAATAAGTAGATCATCATGGCAACATCAAATAGTAAGAAGTATTTGGAAAATTATCATAA
TTACTTGGATAAGAGAGTCACGTTATTCACTAAACCATTTGATCCTTTAATTCCTATCAA
AAGAAATAGACGCGTTCTACCTGAAGAATTAAAATTTCGTGTCTTAAAAAGTCAACATTT
TAACAATTATCTTGATAAAATATCTGACAATAAAAATGATCGCCAGCAAAAAGAAACTGA
AGCTATGCAAATTCTCACTGAAATTGGATTTGATCGAAAAATTCTAGTTATTCGTTCATT
AGGAACTGTAATTGATAAATTAATGGCTCAATTATATAAAAATGTATTTATAAATGAACA
GAGCATAGAGCGATTAAAGGCAATTATGGGAAGACAACAAATCATATACTTACCTTCCCA
TCGATCGTATGTTGATTTCATGCTCATGTCTTATGTTTGCTTTTCTTACAATCTCGAAAT
ACCCGCGATTGCTGCGGGAATGGACTTCCATAGTATGTTTGGTCTCGGAGAACTATTGAG
AAAAACTGGTGCATTTTTTATGCGTAGAACATTCGGAGATGAATTTTATTGGAATATATT
TAAAGAATACATGCATGAAATAATAACATACAATGATTTTGGTGTTGAATTTTTCATTGA
GGGCACAAGAAGCAGAACTTGCAAAGCTCTTTGGCCAAAAACTGGACTTTTATCAATGGC
GCTAGAACCGTTTTTCATGGGTGA
>g11599.t2 Gene=g11599 Length=242
MATSNSKKYLENYHNYLDKRVTLFTKPFDPLIPIKRNRRVLPEELKFRVLKSQHFNNYLD
KISDNKNDRQQKETEAMQILTEIGFDRKILVIRSLGTVIDKLMAQLYKNVFINEQSIERL
KAIMGRQQIIYLPSHRSYVDFMLMSYVCFSYNLEIPAIAAGMDFHSMFGLGELLRKTGAF
FMRRTFGDEFYWNIFKEYMHEIITYNDFGVEFFIEGTRSRTCKALWPKTGLLSMALEPFF
MG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g11599.t2 | PANTHER | PTHR12563 | GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE | 4 | 242 | 0 |
| 3 | g11599.t2 | PANTHER | PTHR12563:SF17 | DIHYDROXYACETONE PHOSPHATE ACYLTRANSFERASE | 4 | 242 | 0 |
| 1 | g11599.t2 | Pfam | PF01553 | Acyltransferase | 119 | 237 | 0 |
| 5 | g11599.t2 | SMART | SM00563 | plsc_2 | 129 | 241 | 0 |
| 4 | g11599.t2 | SUPERFAMILY | SSF69593 | Glycerol-3-phosphate (1)-acyltransferase | 108 | 237 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0044255 | cellular lipid metabolic process | BP |
| GO:0016746 | acyltransferase activity | MF |
| GO:0008374 | O-acyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
