Gene loci information

Transcript annotation

  • This transcript has been annotated as Phosphatidylinositol 4-kinase alpha.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1160 g1160.t1 TTS g1160.t1 8432398 8432398
chr_3 g1160 g1160.t1 isoform g1160.t1 8432548 8439422
chr_3 g1160 g1160.t1 exon g1160.t1.exon1 8432548 8432933
chr_3 g1160 g1160.t1 cds g1160.t1.CDS1 8432548 8432933
chr_3 g1160 g1160.t1 exon g1160.t1.exon2 8432999 8437291
chr_3 g1160 g1160.t1 cds g1160.t1.CDS2 8432999 8437291
chr_3 g1160 g1160.t1 exon g1160.t1.exon3 8437351 8437614
chr_3 g1160 g1160.t1 cds g1160.t1.CDS3 8437351 8437614
chr_3 g1160 g1160.t1 exon g1160.t1.exon4 8437964 8438971
chr_3 g1160 g1160.t1 cds g1160.t1.CDS4 8437964 8438971
chr_3 g1160 g1160.t1 exon g1160.t1.exon5 8439023 8439245
chr_3 g1160 g1160.t1 cds g1160.t1.CDS5 8439023 8439245
chr_3 g1160 g1160.t1 exon g1160.t1.exon6 8439333 8439422
chr_3 g1160 g1160.t1 cds g1160.t1.CDS6 8439333 8439422
chr_3 g1160 g1160.t1 TSS g1160.t1 8440267 8440267

Sequences

>g1160.t1 Gene=g1160 Length=6264
ATGGAACTTAGAGGCGATTTATTTTATCAAAAAGCTATACACTGTCTTGCTAGAACTCTA
GCAAAACTAAATCCAACACCAGAAGATAAGTTACAGCAATTATTTAAGCAATGTCCTCAA
GAGAGTTCAGCAGGAGTATTTTGTATTGATTCACGAGCACATGAGGCTGTGGTAGCAATT
GGACTTTACTTTCTAGAAAGTGGATATCAATATGAAAATTTGATTGTACCTTATTTGATT
CGTCTTTTAAAAGGATTACCAAAATCAATACATAAAGAAGAAGATTTAAAACTATTGGAA
AAGAAAATTGATCGACTTCCATCTACTGAAAAATTTTCGTTCTGTCTCAATACATTACTC
TCTGATATAAGTGTTTGCTGTCCAAATCGACGAGAAGAAATTATTCAAACGCAAGTAGAA
GTATTTGGAACTTTAACAAATATCATCATATCAAAACAAAGCTCATCAACAACAATACTT
TGTAAAGATACAATTCCAATTTTGATTGGCTTATCGCGAGCTATTGGTCGCTATGCAATA
AAAGATCCTGCTTTAATTAGTCGCATGTATCCAGCTCCTGAAAAACCTGTTGTAAAAGCA
ACTAATTTAGAACAAGCAATGTTAAACGATCGACAAAAGTTTTCACCCAATTTTCGTCCA
ATCATTCCGAGGTCAATGTCGGGATCACTGAATATTGAAGCAATAGAAGCAAAGAAAGGA
TCAATCACACCTTCAGCATCACCAAGAAAAAATGAACCGACAGCAAATCGTAAATTATTT
AGTTATTATTCAGTACCATATGATCCAACTCGTTATTTTTTTACAAAATTCGGTTCGAGT
TTTAATCAATTTCCCAATATGAAATCATTTGAACAAGATGGAGATGTTGATTTACAAATC
AAACGTGAAAAAATTCAATTTCCCATCAATCATTTGCAACAAATTTTTGCATTTGCCAAA
AAACTTCTTGCTAAAGAAATTTTGGAATATTTGGATGAGAAAGCTGATGACGTTTTTAGC
ACGCTACAGAATAAAACTTTCGGCTATAAAAGTTTTTCTGAGACTATAAATTTAGTTGTT
GTGACACTTCTTCGTGAACTTTTACAAAATCAAACTGATTTATCGACACCATTTACTAAA
GATATTCAAGAGTTTGTAAAACAGCTGTTCCTTAACGGTCAAACTGAAATAAACAGCAAA
TTACATGAAGAACATAAGAGAAATGAAAATGAACTGAATGTCGTAAACAAATATAAAATC
AATGTTATGGCTAATGCAGCATGCGTCGATTTGCTTACTTGGGCTTGCAGAGATGAAACT
GAGGCTGATAAACTATGCATGCGATTACATCAAAAACTCGATACGAATATTGGCCACAAA
ATCATGTTAGATCATATGCCATTATTAATGGTGTGTTTAGAAGGATTAGGAAAATTGGCG
AAAAAATTTCCAGGAATAGCAGGAACATCTATTTCATATTTAAGAGATTTTCTTGTTGAT
CCGAGTCCAATTTTGGCAAAGTTACATAGTCAAGCAATTATTCAGCAGAAGAAAGAAAAA
GAAATTGCTCCATATCGTATTATCGTTCAAAGTCCCGAACATCAGGCAATTGCTGATGTT
GTTCAACCTCATGGTTTGACAAAATCTCCTGTGTCTGCTTTTGAAGCACTTAGAGAAGCA
GCAATTGAAAATTTGAGTGTCGCATTGCGAGCGGCTCATCCTGGCGATCAATTCTGTGTA
CCTGCACTAATTGCTAATGTTTCAAATCGACTCTTCATAGCAGAGAAAAATGAAAATGAA
TCGAATTTAGTTTCTTTGAATATAATAGTCATGTTGGGACATGTTGCAGTAGCACTGAAA
GATACACCAAAAACTACTCAAAATATTTTACAATTTTTCATTCAACGATTTTGTAAAGTA
GCAAACGAACAAAATGTTTTAATCGTAGATCAACTTGGATGTATGATTATAAGCAAATGC
GAACCTGATATTTTTGATGAAATTATGAAAATGTTTTCACGCGTGATTGTTCAAGCTGCA
TCTTTAGCTTATAGTTCTGATCCAGATAAAAGAAGACAATTTCAACATGTATCTGATGCT
GTTATTAATGCATTAGGCAATATTGCATCGAATATTCAAGGAGAAGCTGAAACATTAGAA
TTATTGATAAAGCTCATGGAAATATTTGTTCAAATTGGTTTAGAAGGAGAACGAAGTTAT
GACAATTCACAAGGAGCACAAAAAGCGTCAAGCAGTGCAGGAAATCTAGGAATGCTTATA
CCTGTAATTGCAACAACAGTTAGACGTTTACCACCGATACGTTCGCCAAAAACTCGTCTT
CATAAACTTTTCAAAGATTTTTGGATGTATTGTGTAGTGATGGGTTTTACAAATGCACGA
TTATGGCCAAGTGATTGGATTCATGGTGTTCAAGAAATTGCCGCCAAATCACCATTACTT
ATATCACAAACACCACATAAATCTGAAATGCGTGAATTAAATTATTCCTCAGCAATTCGG
TCTGATTCAGTTAGTCTCAATGAATTAAGAAGTCAAATTATTTTATTACTCGATCATCCA
CCTGCTGAAGTAACAGGATATATTCATAAACTCACTTTTGCTCAATGTACTTATCTTTTA
AGTGTATACTGGTTAGAAACACTTCGCGTTGAGAACGCTACTGAACCTAGTTTAGACCCA
ATTCTTTCTTATCTATGTGATCCAGTGTTGCAAAAGGACAAGTGTGGCATGTGGCAGTGT
GTGAAATGCATTGGTGATCAAGTTTATGAAAAATTCCGCACAGTTTTAGTAGAACAAGAT
TTAAAGCGTGAAAAAGTATTAGAATCGCAAGCTAGAATGTTGCTTGTGTATTTTAATCAT
ATTCACAAGCAAATTCAACTTGTAGCTGATCAGTATTTGTCACAATTGGTTGATAAATTT
CCACATTTATTATGGAGCAGAAGTGTACTATGGTGTATGCTCGATATTCTTCAATTGCTT
GCATATTCTCTTAGTTTTGATCCAAATCAACCAATTCCTATTGTACAAGTTCCAATGACA
TCATACACATTACAATTCATGGATAATATGCCAGCTAGAGAGAATCGATTTAAAGATTTT
AGTGCCCGTTGTCAAGGAATTTTTAATGAAGCTATGAAATGGGCACCAAATTATACAAGA
AGTCATTTACAACAGTATCAGAGTCAAAATCATATGGGAACACTTTCAAGCCGCGAAGAA
GCATTGGCATTTGATTCAGTGATAAGGTCATGGCTTAGTGAATGCGTTTCTAATGCAAAA
ATCAGTAATCCTGGTGCAACAGCCCGTGGTACATCAAAATTTGTATCAGTTCTATGTTTG
AGAAGCAAATATACAGGAGAAATTGCCGGTTTACTATCAGTTTTAGATGATGAAGGCAAG
AAAGGACTTTGCGAGAGATTGACACAAGAAGTATGGAATGCAACAAAAGAGAAAAATGAG
ACAAAATATAAAGGTGCATTGTGGCGTGCAACAGCATATTTAATTCCAACATATGATAAA
AACAGTGGAAAATTGTTGCACGCTATTGCAACATCGCAAGTTGAATTATTTACTGAAAGA
ACAGTTGAGACAGCTGTTGAATGTTGGCAATGGATATTAACCGCTCGTGAAGATTTAGAA
TTGAGTTTTATTCGTGAAATGGTATCTGCATGGCAAGTTACATTTGATAAGAAAATGGGT
TTATTCTCTGAAGAAGTAGATATTACTAGTCCACTTGCTGCATACGAAGGTTCAAAACTT
GTTCCTCAAGTAATAAATGTAAAACCTCATATGATTTGGCTTGATTTAATATCGGAAATG
GTTGATACAGCAAAATATTGCAATCGTGATAAAGTAGAAATGCTTTGTATGCTTGTTCAT
CGCTGTTTACCCATTGATAAACATTCGAAGCAAACAAGACACATTTCTACCGTTGGATGT
CGTTTTAAATTGTTACAATGTGGATTGAGTTTGTTGCAAGGAAATACAATACCAAAAGGT
CTATCAAGAAACATTCTTCGTGAAAGAATTTATTTTTATACACTAGATTATTTCTGTGGT
GCACCACAATGTCCATCTCAATCACGTGAAACACTTTTCGAAGATATTACAATTTTAATG
ACATTTTGGCAGACAATGAGATCAGAAAAAAGACATTTAATGACATCTGAATTGAGTGAT
TATGAACTAAATGGAAATACATCTGCAAATTTGACAATAGGAAAGATTGGTGCAGATTCT
ATATCAATGGCAGGCAGTGATGTAGCACGATCAACAAGTAGTACAGCTGCTGGATGGTAT
AACACAATTCCACATTCTACTTCAACTCTTTCTCGCAAAGCAATGAGACCGACAAAACGT
GGTGTTCAAAAAGATTCATATGATAAAGATTACATGAAAAAAAGAAATTTGATTTTAGAA
TTATTGGCTGTAGAAATTGATTTTCTTGTAACATGGTATAATCCACTTGCTCTTCCTGAA
ATGCAAGTTAATCCAAAAACTGAAGAAGCATTAGCAACATGGCGTGCACGTCCAATTAAA
ATTAATTTATGGAAAGATAATGTTCAATTAGCATGGAGTTATAATCCAACATTAGCAATT
TTTCTTTCACAAAGAATAAATAATATCGAAATAATTGATGATGAGGTTTCTCGACTTGTA
TTGGCAGATCCAAAAGCTGCAATGCATATTCCTGAAGCTCTTAAATATTTGGTTACAACA
AAAACACTCTTGGCTGATTCTCCGCAATTAAATTATATTCTTACATGGGCGAAAGTAGTT
CCAATTCAAGCACTTTCATATTTTTCTCGTCAATATCCAACACATCCACTTACTGCTCAA
TACGCTGTAAAAACATTGCATTCTTATCCAGCTGATGCTGTTCTTCCATATATTCCACAA
CTTGTGCAAGCATTACGGCATGATACAATGGGCTACGTAACGGAATTTATAAAACAAATT
GCAAAGAAATCTCAAATTGTTGCACATCAACTTATTTGGAATATGAGAACAAACATGTAT
ATGGATGAAGATATGCATCAAAAAGATCCTGTTTTATATGATGTTCTTGAATCTCTTGTT
AATTCAATCATTTCTCAACTTTCTGGACCTGCAAAGCGTTTTTATGAACGTGAATTTGAC
TTTTTCGGTAAAATAACTGCAGTTTCTGGTGAAATTCGAGCATTTCCAAAAGGACAACAG
CGTAAACAAGCATGCTTAGATGAATTGAGAAAAATTGAAGTTCAACTTGGATGTTATTTG
CCGTCAAATCCTGAAGCAATGGTTCTCGATATTGATTACAACAGTGGTACACCTATGCAA
AGCGCTGCAAAGGCACCTTATTTAACAAGATTCAAAGTTCAACGTTGTGGTATAACAGAA
TTAGAACAATTAGCAATGGAAGTATCAGGCGGAAATACAACAAGATCACCAACAAAACAA
CAGTTATCATTGCATGTTGAATGTTGGCAAGCAGCAATTTTTAAAGTTGGCGATGATGTT
CGTCAAGATATGTTAGCTCTTCAAGTCATTTCAATTTTTAAAAATGTTTTTCGACAAGTT
GGATTAGATCTCTTTCTTTTCCCATATCGAGTTGTTGCCACATCGCCTGGATGCGGAGTA
ATTGAGTGTGTGCCAAATGCTAAATCGAGAGATCAACTCGGACGTCAAACAGATACAGGA
CTTTATGAGTACTTTTTACACAATTATGGCGATGAAACAACTAAAGAATTTCAGACTGCA
CGTAGTAACTTTATTAAATCTATGGCTGCTTATTCTGTAATAGGATATCTTCTTCAGATC
AAAGATCGTCACAATGGTAACATTATGATTGATACTGATGGTCATATAATTCATATAGAT
TTTGGATTCATGTTTGAAAGCAGTCCTGGTGGCAATATTGGTTTCGAGCCAGATATGAAA
TTAACTGATGAAATGATCATGATAATGGGAGGAAAAATGGAAGCAGTTCCATTCAAATGG
TTTTGTGAATTATGTGTGCAAGCATTTCTTGCAATTCGTCCATATCAAGATGCGATTGTG
TCATTAGTTTCTCTTATGCTTGACACTGGTCTTCCATGCTTTAGAGGACAAACTATAGCT
CTATTGAATCAGCGTTTTGTATCAAATAAGAATTGCAAAGATGCTGCTGCACACATGTTG
GGAGTTATAAAGAACTCTTATCAGAACTTTAGAACAAGAACATATGACTTAATTCAGTAC
TATCAAAATGCTATTCCTTATTAA

>g1160.t1 Gene=g1160 Length=2087
MELRGDLFYQKAIHCLARTLAKLNPTPEDKLQQLFKQCPQESSAGVFCIDSRAHEAVVAI
GLYFLESGYQYENLIVPYLIRLLKGLPKSIHKEEDLKLLEKKIDRLPSTEKFSFCLNTLL
SDISVCCPNRREEIIQTQVEVFGTLTNIIISKQSSSTTILCKDTIPILIGLSRAIGRYAI
KDPALISRMYPAPEKPVVKATNLEQAMLNDRQKFSPNFRPIIPRSMSGSLNIEAIEAKKG
SITPSASPRKNEPTANRKLFSYYSVPYDPTRYFFTKFGSSFNQFPNMKSFEQDGDVDLQI
KREKIQFPINHLQQIFAFAKKLLAKEILEYLDEKADDVFSTLQNKTFGYKSFSETINLVV
VTLLRELLQNQTDLSTPFTKDIQEFVKQLFLNGQTEINSKLHEEHKRNENELNVVNKYKI
NVMANAACVDLLTWACRDETEADKLCMRLHQKLDTNIGHKIMLDHMPLLMVCLEGLGKLA
KKFPGIAGTSISYLRDFLVDPSPILAKLHSQAIIQQKKEKEIAPYRIIVQSPEHQAIADV
VQPHGLTKSPVSAFEALREAAIENLSVALRAAHPGDQFCVPALIANVSNRLFIAEKNENE
SNLVSLNIIVMLGHVAVALKDTPKTTQNILQFFIQRFCKVANEQNVLIVDQLGCMIISKC
EPDIFDEIMKMFSRVIVQAASLAYSSDPDKRRQFQHVSDAVINALGNIASNIQGEAETLE
LLIKLMEIFVQIGLEGERSYDNSQGAQKASSSAGNLGMLIPVIATTVRRLPPIRSPKTRL
HKLFKDFWMYCVVMGFTNARLWPSDWIHGVQEIAAKSPLLISQTPHKSEMRELNYSSAIR
SDSVSLNELRSQIILLLDHPPAEVTGYIHKLTFAQCTYLLSVYWLETLRVENATEPSLDP
ILSYLCDPVLQKDKCGMWQCVKCIGDQVYEKFRTVLVEQDLKREKVLESQARMLLVYFNH
IHKQIQLVADQYLSQLVDKFPHLLWSRSVLWCMLDILQLLAYSLSFDPNQPIPIVQVPMT
SYTLQFMDNMPARENRFKDFSARCQGIFNEAMKWAPNYTRSHLQQYQSQNHMGTLSSREE
ALAFDSVIRSWLSECVSNAKISNPGATARGTSKFVSVLCLRSKYTGEIAGLLSVLDDEGK
KGLCERLTQEVWNATKEKNETKYKGALWRATAYLIPTYDKNSGKLLHAIATSQVELFTER
TVETAVECWQWILTAREDLELSFIREMVSAWQVTFDKKMGLFSEEVDITSPLAAYEGSKL
VPQVINVKPHMIWLDLISEMVDTAKYCNRDKVEMLCMLVHRCLPIDKHSKQTRHISTVGC
RFKLLQCGLSLLQGNTIPKGLSRNILRERIYFYTLDYFCGAPQCPSQSRETLFEDITILM
TFWQTMRSEKRHLMTSELSDYELNGNTSANLTIGKIGADSISMAGSDVARSTSSTAAGWY
NTIPHSTSTLSRKAMRPTKRGVQKDSYDKDYMKKRNLILELLAVEIDFLVTWYNPLALPE
MQVNPKTEEALATWRARPIKINLWKDNVQLAWSYNPTLAIFLSQRINNIEIIDDEVSRLV
LADPKAAMHIPEALKYLVTTKTLLADSPQLNYILTWAKVVPIQALSYFSRQYPTHPLTAQ
YAVKTLHSYPADAVLPYIPQLVQALRHDTMGYVTEFIKQIAKKSQIVAHQLIWNMRTNMY
MDEDMHQKDPVLYDVLESLVNSIISQLSGPAKRFYEREFDFFGKITAVSGEIRAFPKGQQ
RKQACLDELRKIEVQLGCYLPSNPEAMVLDIDYNSGTPMQSAAKAPYLTRFKVQRCGITE
LEQLAMEVSGGNTTRSPTKQQLSLHVECWQAAIFKVGDDVRQDMLALQVISIFKNVFRQV
GLDLFLFPYRVVATSPGCGVIECVPNAKSRDQLGRQTDTGLYEYFLHNYGDETTKEFQTA
RSNFIKSMAAYSVIGYLLQIKDRHNGNIMIDTDGHIIHIDFGFMFESSPGGNIGFEPDMK
LTDEMIMIMGGKMEAVPFKWFCELCVQAFLAIRPYQDAIVSLVSLMLDTGLPCFRGQTIA
LLNQRFVSNKNCKDAAAHMLGVIKNSYQNFRTRTYDLIQYYQNAIPY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g1160.t1 CDD cd05167 PI4Kc_III_alpha 1767 2086 0.0
9 g1160.t1 Gene3D G3DSA:1.25.40.70 - 1549 1695 3.2E-13
8 g1160.t1 Gene3D G3DSA:3.30.1010.10 - 1715 1883 2.6E-27
10 g1160.t1 Gene3D G3DSA:1.10.1070.11 - 1884 2085 2.9E-63
3 g1160.t1 PANTHER PTHR10048:SF15 PHOSPHATIDYLINOSITOL 4-KINASE ALPHA-RELATED 227 2085 0.0
4 g1160.t1 PANTHER PTHR10048 PHOSPHATIDYLINOSITOL KINASE 227 2085 0.0
2 g1160.t1 Pfam PF00613 Phosphoinositide 3-kinase family, accessory domain (PIK domain) 1569 1708 4.4E-25
1 g1160.t1 Pfam PF00454 Phosphatidylinositol 3- and 4-kinase 1830 2034 5.2E-42
13 g1160.t1 ProSitePatterns PS00915 Phosphatidylinositol 3- and 4-kinases signature 1. 1834 1848 -
12 g1160.t1 ProSitePatterns PS00916 Phosphatidylinositol 3- and 4-kinases signature 2. 1927 1947 -
17 g1160.t1 ProSiteProfiles PS51545 PIK helical domain profile. 1524 1699 16.455
16 g1160.t1 ProSiteProfiles PS50290 Phosphatidylinositol 3- and 4-kinases family profile. 1830 2087 64.797
14 g1160.t1 SMART SM00145 pi3k_hr2_4 1527 1713 7.4E-16
15 g1160.t1 SMART SM00146 pi3k_hr1_6 1831 2084 3.1E-105
6 g1160.t1 SUPERFAMILY SSF48371 ARM repeat 12 720 7.49E-8
5 g1160.t1 SUPERFAMILY SSF48371 ARM repeat 1514 1699 2.49E-42
7 g1160.t1 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 1712 2082 2.04E-84

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016301 kinase activity MF
GO:0048015 phosphatidylinositol-mediated signaling BP
GO:0046854 phosphatidylinositol phosphate biosynthetic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values