Gene loci information

Transcript annotation

  • This transcript has been annotated as Phosphatidylinositol 4-kinase alpha.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1160 g1160.t5 isoform g1160.t5 8437351 8439422
chr_3 g1160 g1160.t5 exon g1160.t5.exon1 8437351 8437614
chr_3 g1160 g1160.t5 cds g1160.t5.CDS1 8437352 8437614
chr_3 g1160 g1160.t5 exon g1160.t5.exon2 8437964 8438971
chr_3 g1160 g1160.t5 cds g1160.t5.CDS2 8437964 8438971
chr_3 g1160 g1160.t5 exon g1160.t5.exon3 8439023 8439245
chr_3 g1160 g1160.t5 cds g1160.t5.CDS3 8439023 8439245
chr_3 g1160 g1160.t5 exon g1160.t5.exon4 8439333 8439422
chr_3 g1160 g1160.t5 cds g1160.t5.CDS4 8439333 8439422
chr_3 g1160 g1160.t5 TSS g1160.t5 8440267 8440267
chr_3 g1160 g1160.t5 TTS g1160.t5 NA NA

Sequences

>g1160.t5 Gene=g1160 Length=1585
ATGGAACTTAGAGGCGATTTATTTTATCAAAAAGCTATACACTGTCTTGCTAGAACTCTA
GCAAAACTAAATCCAACACCAGAAGATAAGTTACAGCAATTATTTAAGCAATGTCCTCAA
GAGAGTTCAGCAGGAGTATTTTGTATTGATTCACGAGCACATGAGGCTGTGGTAGCAATT
GGACTTTACTTTCTAGAAAGTGGATATCAATATGAAAATTTGATTGTACCTTATTTGATT
CGTCTTTTAAAAGGATTACCAAAATCAATACATAAAGAAGAAGATTTAAAACTATTGGAA
AAGAAAATTGATCGACTTCCATCTACTGAAAAATTTTCGTTCTGTCTCAATACATTACTC
TCTGATATAAGTGTTTGCTGTCCAAATCGACGAGAAGAAATTATTCAAACGCAAGTAGAA
GTATTTGGAACTTTAACAAATATCATCATATCAAAACAAAGCTCATCAACAACAATACTT
TGTAAAGATACAATTCCAATTTTGATTGGCTTATCGCGAGCTATTGGTCGCTATGCAATA
AAAGATCCTGCTTTAATTAGTCGCATGTATCCAGCTCCTGAAAAACCTGTTGTAAAAGCA
ACTAATTTAGAACAAGCAATGTTAAACGATCGACAAAAGTTTTCACCCAATTTTCGTCCA
ATCATTCCGAGGTCAATGTCGGGATCACTGAATATTGAAGCAATAGAAGCAAAGAAAGGA
TCAATCACACCTTCAGCATCACCAAGAAAAAATGAACCGACAGCAAATCGTAAATTATTT
AGTTATTATTCAGTACCATATGATCCAACTCGTTATTTTTTTACAAAATTCGGTTCGAGT
TTTAATCAATTTCCCAATATGAAATCATTTGAACAAGATGGAGATGTTGATTTACAAATC
AAACGTGAAAAAATTCAATTTCCCATCAATCATTTGCAACAAATTTTTGCATTTGCCAAA
AAACTTCTTGCTAAAGAAATTTTGGAATATTTGGATGAGAAAGCTGATGACGTTTTTAGC
ACGCTACAGAATAAAACTTTCGGCTATAAAAGTTTTTCTGAGACTATAAATTTAGTTGTT
GTGACACTTCTTCGTGAACTTTTACAAAATCAAACTGATTTATCGACACCATTTACTAAA
GATATTCAAGAGTTTGTAAAACAGCTGTTCCTTAACGGTCAAACTGAAATAAACAGCAAA
TTACATGAAGAACATAAGAGAAATGAAAATGAACTGAATGTCGTAAACAAATATAAAATC
AATGTTATGGCTAATGCAGCATGCGTCGATTTGCTTACTTGGGCTTGCAGAGATGAAACT
GAGGCTGATAAACTATGCATGCGATTACATCAAAAACTCGATACGAATATTGGCCACAAA
ATCATGTTAGATCATATGCCATTATTAATGGTGTGTTTAGAAGGATTAGGAAAATTGGCG
AAAAAATTTCCAGGAATAGCAGGAACATCTATTTCATATTTAAGAGATTTTCTTGTTGAT
CCGAGTCCAATTTTGGCAAAGTTACATAGTCAAGCAATTATTCAGCAGAAGAAAGAAAAA
GAAATTGCTCCATATCGTATTATCG

>g1160.t5 Gene=g1160 Length=528
MELRGDLFYQKAIHCLARTLAKLNPTPEDKLQQLFKQCPQESSAGVFCIDSRAHEAVVAI
GLYFLESGYQYENLIVPYLIRLLKGLPKSIHKEEDLKLLEKKIDRLPSTEKFSFCLNTLL
SDISVCCPNRREEIIQTQVEVFGTLTNIIISKQSSSTTILCKDTIPILIGLSRAIGRYAI
KDPALISRMYPAPEKPVVKATNLEQAMLNDRQKFSPNFRPIIPRSMSGSLNIEAIEAKKG
SITPSASPRKNEPTANRKLFSYYSVPYDPTRYFFTKFGSSFNQFPNMKSFEQDGDVDLQI
KREKIQFPINHLQQIFAFAKKLLAKEILEYLDEKADDVFSTLQNKTFGYKSFSETINLVV
VTLLRELLQNQTDLSTPFTKDIQEFVKQLFLNGQTEINSKLHEEHKRNENELNVVNKYKI
NVMANAACVDLLTWACRDETEADKLCMRLHQKLDTNIGHKIMLDHMPLLMVCLEGLGKLA
KKFPGIAGTSISYLRDFLVDPSPILAKLHSQAIIQQKKEKEIAPYRII

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed