General information for g11601.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ADP-ribosylation factor GTPase-activating protein 2.
Parent gene
- The parent gene g11601 is located on chr_1: 17411439..17412756 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11601 | g11601.t8 | TSS | g11601.t8 | 17410433 | 17410433 |
| chr_1 | g11601 | g11601.t8 | isoform | g11601.t8 | 17410524 | 17412544 |
| chr_1 | g11601 | g11601.t8 | exon | g11601.t8.exon1 | 17410524 | 17410592 |
| chr_1 | g11601 | g11601.t8 | exon | g11601.t8.exon2 | 17410702 | 17410798 |
| chr_1 | g11601 | g11601.t8 | exon | g11601.t8.exon3 | 17410864 | 17410941 |
| chr_1 | g11601 | g11601.t8 | exon | g11601.t8.exon4 | 17411025 | 17411154 |
| chr_1 | g11601 | g11601.t8 | exon | g11601.t8.exon5 | 17411221 | 17411358 |
| chr_1 | g11601 | g11601.t8 | cds | g11601.t8.CDS1 | 17411335 | 17411358 |
| chr_1 | g11601 | g11601.t8 | exon | g11601.t8.exon6 | 17411426 | 17412544 |
| chr_1 | g11601 | g11601.t8 | cds | g11601.t8.CDS2 | 17411426 | 17412544 |
| chr_1 | g11601 | g11601.t8 | TTS | g11601.t8 | 17412771 | 17412771 |
Sequences
>g11601.t8 Gene=g11601 Length=1631
ATGGATTGTCCACCTAAAGCTGATATTGATGCAATATTCAATCGTTTAAGATCATTGCCG
TATAATAAAGTTTGTTTTGATTGTAATGCAAAAAATCCAACATGGTCCTCGATAACATAT
GGTGTCTTCATTTGCTTAGATTGCTCTTCTGTCCACAGAAGCTTAGGGGTTCACTTAACA
TTTGTTCGCTCAACACAACTTGATACTAATTGGAATTGGCAACAAATAAGACAAATGCAG
GTTTTTCCTTTTTCCGTCAACATAATTGTGTTACAACTGATGCCCAACAAAAATATAACT
CACGTGCTGCTCAACTATATAAAGATAAATTGATCACTTTAGCTCAACAAGCATGTAAAC
GACATGGAACCACTCTTCATATTAACGAACTTCATTATCATCATGAAGAAACTACTGAAA
AGGAAAGCGACTTTTTTGAAAATTATGATAATGAAAATGTTACTCAAAACACAAACAATA
ATATTAACATGAATGTGGAAAATAATGAAATGAATAAATCAACAGCAAAAAAGCCTGTTT
CTGTTTCTAGCAATTTGACTGAATCCAATGATAATGCTGAGCCAAGTGTTAATTTTCTTG
ATTCGGTTGAAACAACAACACCGCCTAAATCATCGATTGGAGTCAGAAAGATTCAACCAA
AAAAATCGGGTATCGGTGCTAAAAAAGGACTTGGAGCGAAAAAAGTTCAAAACTCAAATT
TCGCAGATATTGAACAGCGTGCAACATTAGCGGATCAACTTAAAGAACCTGTAATTGATA
AGAAACTCACACAAGAGGAAGAAGCGGAAGCTATTTCGAGTGTGAGGCTAGCATATCAAG
ACTTATCTCTTAAGAAGAGTAAAGAAGAGGAACGCCTTAAAAATCTCGATCCCAATAAAG
CAAAACAGATGGAAAGACTAGGAATGGCATTCAATGTTCGTGGTGGAGTATCTCATTCAA
TCCTAACTGACATGCAAACTATCAATCAAGATCAAGCACCAGTTAATATGAAATCTTCAT
CATCTAAAAATTTTGATCGTGACAATAGTTCAAGTAACGATATGTTTGATGATTATTTGT
ACAGTCCAAATTCAAATAGCAGTAATAATAAACAAGATTTCCAAGATGCAATGATGATGG
GTTTTGAACCAATTGAGTTAAAACAAAATGTTTATACAATGTTTTCTCCAACTGAAAAGG
AGACATCTTCAAAAAATTTTATGCAAACATCGGTCGATAAACAGCCCTCATCATCGAGTA
AAACTAATAGAAATGTTAAATCGGATACCGCAAAATCTTCATCTAGTAATTTTGATTCCG
ATTCTATACAAAAAAAATTCGCAGGCGCTAAGGGTATTTCATCTGATCAATTTTTTGGCA
ATGATGCTTCACATGAAAAATTTTCAAATCTGTCTAAGTTCCAAGGATCGACTGCTATTT
CTTCTGCTGATTATTTTGGCGATGGACAAGAATCGATTAAAAAGACTTCTCGGTTAGAAT
TTCACAGTCCGGATCTTGATTTAGAAGATGTTAAGGATTCAATAAAAACTGGAGTTACAC
GGGTAGCAGGTAGACTTAGTACGCTAGCAAATAATGTTAATAATTTCATTCAGGACAAGT
ATGGTCATTAA
>g11601.t8 Gene=g11601 Length=380
MNVENNEMNKSTAKKPVSVSSNLTESNDNAEPSVNFLDSVETTTPPKSSIGVRKIQPKKS
GIGAKKGLGAKKVQNSNFADIEQRATLADQLKEPVIDKKLTQEEEAEAISSVRLAYQDLS
LKKSKEEERLKNLDPNKAKQMERLGMAFNVRGGVSHSILTDMQTINQDQAPVNMKSSSSK
NFDRDNSSSNDMFDDYLYSPNSNSSNNKQDFQDAMMMGFEPIELKQNVYTMFSPTEKETS
SKNFMQTSVDKQPSSSSKTNRNVKSDTAKSSSSNFDSDSIQKKFAGAKGISSDQFFGNDA
SHEKFSNLSKFQGSTAISSADYFGDGQESIKKTSRLEFHSPDLDLEDVKDSIKTGVTRVA
GRLSTLANNVNNFIQDKYGH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g11601.t8 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - |
| 5 | g11601.t8 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 68 | - |
| 4 | g11601.t8 | MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 275 | - |
| 1 | g11601.t8 | PANTHER | PTHR45686 | ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED | 10 | 379 | 4.3E-54 |
| 2 | g11601.t8 | PANTHER | PTHR45686:SF10 | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 2 | 10 | 379 | 4.3E-54 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
