General information for g11601.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11601 is located on chr_1: 17411439..17412756 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11601 | g11601.t9 | TSS | g11601.t9 | 17410433 | 17410433 |
| chr_1 | g11601 | g11601.t9 | isoform | g11601.t9 | 17411439 | 17412756 |
| chr_1 | g11601 | g11601.t9 | exon | g11601.t9.exon1 | 17411439 | 17412756 |
| chr_1 | g11601 | g11601.t9 | cds | g11601.t9.CDS1 | 17411822 | 17412544 |
| chr_1 | g11601 | g11601.t9 | TTS | g11601.t9 | 17412771 | 17412771 |
Sequences
>g11601.t9 Gene=g11601 Length=1318
CAAAAAAGCCTGTTTCTGTTTCTAGCAATTTGACTGAATCCAATGATAATGCTGAGCCAA
GTGTTAATTTTCTTGATTCGGTTGAAACAACAACACCGCCTAAATCATCGATTGGAGTCA
GAAAGATTCAACCAAAAAAATCGGGTATCGGTGCTAAAAAAGGACTTGGAGCGAAAAAAG
TTCAAAACTCAAATTTCGCAGATATTGAACAGCGTGCAACATTAGCGGATCAACTTAAAG
AACCTGTAATTGATAAGAAACTCACACAAGAGGAAGAAGCGGAAGCTATTTCGAGTGTGA
GGCTAGCATATCAAGACTTATCTCTTAAGAAGAGTAAAGAAGAGGAACGCCTTAAAAATC
TCGATCCCAATAAAGCAAAACAGATGGAAAGACTAGGAATGGCATTCAATGTTCGTGGTG
GAGTATCTCATTCAATCCTAACTGACATGCAAACTATCAATCAAGATCAAGCACCAGTTA
ATATGAAATCTTCATCATCTAAAAATTTTGATCGTGACAATAGTTCAAGTAACGATATGT
TTGATGATTATTTGTACAGTCCAAATTCAAATAGCAGTAATAATAAACAAGATTTCCAAG
ATGCAATGATGATGGGTTTTGAACCAATTGAGTTAAAACAAAATGTTTATACAATGTTTT
CTCCAACTGAAAAGGAGACATCTTCAAAAAATTTTATGCAAACATCGGTCGATAAACAGC
CCTCATCATCGAGTAAAACTAATAGAAATGTTAAATCGGATACCGCAAAATCTTCATCTA
GTAATTTTGATTCCGATTCTATACAAAAAAAATTCGCAGGCGCTAAGGGTATTTCATCTG
ATCAATTTTTTGGCAATGATGCTTCACATGAAAAATTTTCAAATCTGTCTAAGTTCCAAG
GATCGACTGCTATTTCTTCTGCTGATTATTTTGGCGATGGACAAGAATCGATTAAAAAGA
CTTCTCGGTTAGAATTTCACAGTCCGGATCTTGATTTAGAAGATGTTAAGGATTCAATAA
AAACTGGAGTTACACGGGTAGCAGGTAGACTTAGTACGCTAGCAAATAATGTTAATAATT
TCATTCAGGACAAGTATGGTCATTAAATTTTTTATATGATGTAAAACACTCTTGACTACT
GTTGCCTGTAAAATAATTCCACAAAATTTTTTTTCTAAAAAAAACATTTAAACATCGTTT
TTCTTTAAATTAAAAAGTTAAATCCAATATTTAATCAAAAATGATTGATTTTATTTTTTA
TTAAAATTCACTTTAATATAAATTGTAATTCAATAAATTGAAAATGGATAATAAAGTT
>g11601.t9 Gene=g11601 Length=240
MERLGMAFNVRGGVSHSILTDMQTINQDQAPVNMKSSSSKNFDRDNSSSNDMFDDYLYSP
NSNSSNNKQDFQDAMMMGFEPIELKQNVYTMFSPTEKETSSKNFMQTSVDKQPSSSSKTN
RNVKSDTAKSSSSNFDSDSIQKKFAGAKGISSDQFFGNDASHEKFSNLSKFQGSTAISSA
DYFGDGQESIKKTSRLEFHSPDLDLEDVKDSIKTGVTRVAGRLSTLANNVNNFIQDKYGH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g11601.t9 | MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 135 | - |
| 1 | g11601.t9 | PANTHER | PTHR45686 | ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED | 2 | 239 | 3.0E-26 |
| 2 | g11601.t9 | PANTHER | PTHR45686:SF10 | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 2 | 2 | 239 | 3.0E-26 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
