General information for g11605.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Bifunctional 3’-phosphoadenosine 5’-phosphosulfate synthase.
Parent gene
- The parent gene g11605 is located on chr_1: 17426038..17428697 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11605 | g11605.t3 | TTS | g11605.t3 | 17424500 | 17424500 |
| chr_1 | g11605 | g11605.t3 | isoform | g11605.t3 | 17424763 | 17426630 |
| chr_1 | g11605 | g11605.t3 | exon | g11605.t3.exon1 | 17424763 | 17425817 |
| chr_1 | g11605 | g11605.t3 | cds | g11605.t3.CDS1 | 17424763 | 17425817 |
| chr_1 | g11605 | g11605.t3 | exon | g11605.t3.exon2 | 17425896 | 17426037 |
| chr_1 | g11605 | g11605.t3 | cds | g11605.t3.CDS2 | 17425896 | 17426037 |
| chr_1 | g11605 | g11605.t3 | exon | g11605.t3.exon3 | 17426115 | 17426630 |
| chr_1 | g11605 | g11605.t3 | cds | g11605.t3.CDS3 | 17426115 | 17426396 |
| chr_1 | g11605 | g11605.t3 | TSS | g11605.t3 | 17427117 | 17427117 |
Sequences
>g11605.t3 Gene=g11605 Length=1713
GCAGGTAAAACTTCTATTGGTTTTGAACTTGAAGCACTTCTAGTATCAAAGGGCATTCCT
TCATATGGACTCGATGGTGACAACATTCGTACGGGATTAAATAAAAACTTAGGCTTCTCG
CAAGCAGATCGCGAAGAAAATATTCGTCGAGTGGCTGAAGTGGCTAAATTGTTTGCCGAT
AGTGGTGTTGTGGCAATTTGTAGTTTTGTTTCTCCATTTGCTGAAGATCGTGATATGGCG
CGAAGAATTCATAAAGAGGCCGATTTGAAGTTTTATGAAATATTCGTCGATACACCATTA
AACGTTTGCGAGTCTCGTGACGTCAAAGGTCTTTACAAAAAAGCTCGAGAAGGTGCAATT
CAAGGCTTTACTGGTGTAACGCAAGCTTATGAAGCTCCAGATAAACCGGATTTAATTGTA
AAAACTGAAGGTCTTTCCATTCAAGAATCAACTCAATGCGTTATTGAGCTGCTAGTTAAA
GAAAATATCATCCCAAAGAGTATCACAGATGTTTATGGAATCCATGAATTATTTGTTCCA
TCACACCGTCGTTCCGCAATGCTTGCAGAAGCTCAAACTTTGCCCACATTAGAGATCAGT
GAAGTTGAATGTCAATGGCTTCAAGTACTAGCGGAGGGTTGGGCTTCACCTCTTAAAGGT
TTTATGCGTGAAAAGGACTATCTTCAAACATTACATTTTAATTGTATTGTGACAGATGAC
GGTACCGTCATTAATCATTCTGTCCCGATTGTTTTATCGCTATCAGAGAGTGATAAGAGT
CGATTACAAGATGTTAGCGCATTCACATTAACTTATGATAAGAAACCGATCGCAATTTTA
CGTAACCCTGAATTCTTTTATCAACGAAAAGAGGAACGTTGTGCTCGACAATTTGGCACA
GCTAATCCCAATCATCCTTATATCAAGATGATTTTAGAGTCTGGTGATTTTCTTGTTGGT
GGTGATTTGGAAGTCTTAGATAGAATTAAATGGAATGATGGTTTAGATCAATATCGTTTA
ACACCAAATGAAATTCGCAACAAGATTAAGGAAATGAATGCAGATGCAGTTTTTGCTTTT
CAATTGAGAAATCCTATTCATAACGGTCATGCGTTATTAATGAAAGATTGTAAGCGACAA
TTATTAGATCGGGGTTATAAAAAACCAGTATTACTTTTACATCCACTCGGCGGATGGACG
AAAGATGACGATGTTCCTTTGCCAACCAGAATGGCTCAACACCAAGCTGTCATGGACGCA
GGAGTGTTGGATCGTGATAGCACAATTCTTGCCATTTTTCCTTCGCCAATGATGTATGCG
GGACCAACTGAAGTTCAATGGCATGCTAAATCTCGAATGAATGCCGGTGCAAGCTTTTAT
ATTGTAGGTCGCGATCCAGCCGGAATGCCACATCCCAATAAAGAAATGTACCCTGATGGT
AATCTTTATGATGACACACATGGCAGCAGAGTTTTGAAAATGGCTCCGGGACTTGATAAT
ATCGTTATTTTGCCATTTAGAGTGGCAGCTTATGATACATCTGTTAACGAAATGGCATTT
TTCGACCCTAAACGTAAAGAAGACTTTTTATTCATATCTGGCACAAAAATGCGTGGATTT
GCAAAAAGTGGTGAGTTGCCGCCAAAAGGATTTATGGAACCCAAAGCATGGAGTATTCTT
GCTGAATATTATCAATCACTTAATAAGAACTAG
>g11605.t3 Gene=g11605 Length=492
MARRIHKEADLKFYEIFVDTPLNVCESRDVKGLYKKAREGAIQGFTGVTQAYEAPDKPDL
IVKTEGLSIQESTQCVIELLVKENIIPKSITDVYGIHELFVPSHRRSAMLAEAQTLPTLE
ISEVECQWLQVLAEGWASPLKGFMREKDYLQTLHFNCIVTDDGTVINHSVPIVLSLSESD
KSRLQDVSAFTLTYDKKPIAILRNPEFFYQRKEERCARQFGTANPNHPYIKMILESGDFL
VGGDLEVLDRIKWNDGLDQYRLTPNEIRNKIKEMNADAVFAFQLRNPIHNGHALLMKDCK
RQLLDRGYKKPVLLLHPLGGWTKDDDVPLPTRMAQHQAVMDAGVLDRDSTILAIFPSPMM
YAGPTEVQWHAKSRMNAGASFYIVGRDPAGMPHPNKEMYPDGNLYDDTHGSRVLKMAPGL
DNIVILPFRVAAYDTSVNEMAFFDPKRKEDFLFISGTKMRGFAKSGELPPKGFMEPKAWS
ILAEYYQSLNKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g11605.t3 | CDD | cd00517 | ATPS | 116 | 485 | 0 |
| 9 | g11605.t3 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 90 | 0 |
| 11 | g11605.t3 | Gene3D | G3DSA:3.10.400.10 | Sulfate adenylyltransferase | 95 | 254 | 0 |
| 10 | g11605.t3 | Gene3D | G3DSA:3.40.50.620 | HUPs | 255 | 492 | 0 |
| 4 | g11605.t3 | PANTHER | PTHR11055:SF17 | BIFUNCTIONAL 3’-PHOSPHOADENOSINE 5’-PHOSPHOSULFATE SYNTHASE 1 | 2 | 491 | 0 |
| 5 | g11605.t3 | PANTHER | PTHR11055 | BIFUNCTIONAL 3’-PHOSPHOADENOSINE 5’-PHOSPHOSULFATE SYNTHASE | 2 | 491 | 0 |
| 3 | g11605.t3 | Pfam | PF01583 | Adenylylsulphate kinase | 1 | 66 | 0 |
| 2 | g11605.t3 | Pfam | PF14306 | PUA-like domain | 96 | 249 | 0 |
| 1 | g11605.t3 | Pfam | PF01747 | ATP-sulfurylase | 258 | 485 | 0 |
| 7 | g11605.t3 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2 | 82 | 0 |
| 8 | g11605.t3 | SUPERFAMILY | SSF88697 | PUA domain-like | 96 | 253 | 0 |
| 6 | g11605.t3 | SUPERFAMILY | SSF52374 | Nucleotidylyl transferase | 259 | 486 | 0 |
| 12 | g11605.t3 | TIGRFAM | TIGR00339 | sopT: sulfate adenylyltransferase | 99 | 484 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000103 | sulfate assimilation | BP |
| GO:0004781 | sulfate adenylyltransferase (ATP) activity | MF |
KEGG
Orthology
- This transcript has been annotated with K13811 (3’-phosphoadenosine 5’-phosphosulfate synthase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
