General information for g11619.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Septin-2.
Parent gene
- The parent gene g11619 is located on chr_1: 17476238..17477313 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11619 | g11619.t3 | TTS | g11619.t3 | 17473010 | 17473010 |
| chr_1 | g11619 | g11619.t3 | isoform | g11619.t3 | 17473728 | 17476238 |
| chr_1 | g11619 | g11619.t3 | exon | g11619.t3.exon1 | 17473728 | 17473892 |
| chr_1 | g11619 | g11619.t3 | cds | g11619.t3.CDS1 | 17473728 | 17473892 |
| chr_1 | g11619 | g11619.t3 | exon | g11619.t3.exon2 | 17473961 | 17474200 |
| chr_1 | g11619 | g11619.t3 | cds | g11619.t3.CDS2 | 17473961 | 17474200 |
| chr_1 | g11619 | g11619.t3 | exon | g11619.t3.exon3 | 17474281 | 17474355 |
| chr_1 | g11619 | g11619.t3 | cds | g11619.t3.CDS3 | 17474281 | 17474355 |
| chr_1 | g11619 | g11619.t3 | exon | g11619.t3.exon4 | 17474412 | 17474897 |
| chr_1 | g11619 | g11619.t3 | cds | g11619.t3.CDS4 | 17474412 | 17474678 |
| chr_1 | g11619 | g11619.t3 | exon | g11619.t3.exon5 | 17474971 | 17475214 |
| chr_1 | g11619 | g11619.t3 | exon | g11619.t3.exon6 | 17476212 | 17476238 |
| chr_1 | g11619 | g11619.t3 | TSS | g11619.t3 | 17476335 | 17476335 |
Sequences
>g11619.t3 Gene=g11619 Length=1237
ATGACAGAAGTAGACATTCTCAACAAGCTCGAAAATCATTTGCGTAATATGAAACTCTCT
GGCCATGTCGGTTTCGACTCTTTGCCTGATCAACTCGTCAATAAAAGCGTGCAAAATGGA
TTTGTTTTCAACATTTTATGTATTTCTGAAACTGGTCTTGGAAAATCGACTTTAATGGAT
TCTCTTTTCAATACAAATTTTGAATCGACACCGAGTCCTCATACTTTACCAAGTGTAAAA
TTAAAGGCACAAACCTTTGAGTTGCAAGAAACTAACAATTGTGGATACTGTGGGTTATGG
AGATCAAATTAACAAAGATGATTCATTTAAATCCTTAGTTGATTACATAGATCAACAATA
TGAAGCTTACTTGCAAGAGGAGTTAAAAATCAAGAGATCACTGTCATCTTATCATGACTC
GCGTATTCATGCATGCTTATATTTCATCTGTCCAACTGGACATGGTTTAAAATCACTCGA
TTTAGTTTGCATGAAAAAACTTGATACAAAAGTTAATATCATACCGATCATTGCCAAAGC
AGATACCATTTCTAAAACAGAATTGCAAAAATTTAAAGCAAAAATCAATGAAGAATTGCA
AGCAAATGGAGTTCAAATATATCATTTTCCAACTGATGATGAAACGGTAGCTGAGCAAAA
TAATACCATGAATTCTCACATTCCATTTGCAGTTGTAGGCAGCACTGAATTTGTCAAATT
AGGAAGTAAAATGATTCGTGCTCGTCAATATCCCTGGGGTATTGTTCAAGTCGAAGACCC
TTCTCATTGCGATTTTGTCAAACTTCGTGAAATGTTAATAAGAACTAATATGGAAGATAT
GCGTGAAAAAACTCACACACGTCATTATGAATTATATCGTCAAAAACGTCTTGAACAAAT
GGGATTCACTGATGTCGATAGTGAAAATAAACCAGTATCATTTCAACAAACATTTGAAGC
TAAGCGTTCAAACCATTTAGCAGAATTGCAAGCAAAAGAAGATGAAGTTCGCCAAATGTT
TGTAGTGCGTGTGAAAGAAAAAGAATCCGAATTGAAGGAAAGTGAAAAAGAGTTGCATGC
CAAATTTGAAAAGTTGAAAAAAGACCATGCTGAAGAGAAACGAAAATTAGAAGAGGCACG
TAAAAAACTTGAAGAAGAGTTTGTGGAATTTAACAGGCGTAAGACCCAATTTAGTTCAAG
CCACACTTTGACACTTGGAAAAAATAAGAAAAAATAG
>g11619.t3 Gene=g11619 Length=248
MKKLDTKVNIIPIIAKADTISKTELQKFKAKINEELQANGVQIYHFPTDDETVAEQNNTM
NSHIPFAVVGSTEFVKLGSKMIRARQYPWGIVQVEDPSHCDFVKLREMLIRTNMEDMREK
THTRHYELYRQKRLEQMGFTDVDSENKPVSFQQTFEAKRSNHLAELQAKEDEVRQMFVVR
VKEKESELKESEKELHAKFEKLKKDHAEEKRKLEEARKKLEEEFVEFNRRKTQFSSSHTL
TLGKNKKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11619.t3 | Coils | Coil | Coil | 174 | 230 | - |
| 5 | g11619.t3 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 138 | 4.3E-56 |
| 2 | g11619.t3 | PANTHER | PTHR18884:SF69 | LD28935P-RELATED | 1 | 231 | 5.1E-149 |
| 3 | g11619.t3 | PANTHER | PTHR18884 | SEPTIN | 1 | 231 | 5.1E-149 |
| 8 | g11619.t3 | PIRSF | PIRSF006698 | Septin | 1 | 248 | 2.8E-71 |
| 1 | g11619.t3 | Pfam | PF00735 | Septin | 1 | 138 | 7.5E-51 |
| 7 | g11619.t3 | ProSiteProfiles | PS51719 | Septin-type guanine nucleotide-binding (G) domain profile. | 1 | 136 | 56.196 |
| 4 | g11619.t3 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 3 | 101 | 1.4E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005525 | GTP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed