Gene loci information

Transcript annotation

  • This transcript has been annotated as Septin-2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11619 g11619.t5 TTS g11619.t5 17473580 17473580
chr_1 g11619 g11619.t5 isoform g11619.t5 17474416 17476238
chr_1 g11619 g11619.t5 exon g11619.t5.exon1 17474416 17474897
chr_1 g11619 g11619.t5 cds g11619.t5.CDS1 17474418 17474897
chr_1 g11619 g11619.t5 exon g11619.t5.exon2 17474954 17475214
chr_1 g11619 g11619.t5 cds g11619.t5.CDS2 17474954 17475214
chr_1 g11619 g11619.t5 exon g11619.t5.exon3 17476212 17476238
chr_1 g11619 g11619.t5 cds g11619.t5.CDS3 17476212 17476238
chr_1 g11619 g11619.t5 TSS g11619.t5 17476335 17476335

Sequences

>g11619.t5 Gene=g11619 Length=770
ATGACAGAAGTAGACATTCTCAACAAGCTCGAAAATCATTTGCGTAATATGAAACTCTCT
GGCCATGTCGGTTTCGACTCTTTGCCTGATCAACTCGTCAATAAAAGCGTGCAAAATGGA
TTTGTTTTCAACATTTTATGTATTTCTGAAACTGGTCTTGGAAAATCGACTTTAATGGAT
TCTCTTTTCAATACAAATTTTGAATCGACACCGAGTCCTCATACTTTACCAAGTGTAAAA
TTAAAGGCACAAACCTTTGAGTTGCAAGAAAGTAACGTAAGACTAAAGCTAACAATTGTG
GATACTGTGGGTTATGGAGATCAAATTAACAAAGATGATTCATTTAAATCCTTAGTTGAT
TACATAGATCAACAATATGAAGCTTACTTGCAAGAGGAGTTAAAAATCAAGAGATCACTG
TCATCTTATCATGACTCGCGTATTCATGCATGCTTATATTTCATCTGTCCAACTGGACAT
GGTTTAAAATCACTCGATTTAGTTTGCATGAAAAAACTTGATACAAAAGTTAATATCATA
CCGATCATTGCCAAAGCAGATACCATTTCTAAAACAGAATTGCAAAAATTTAAAGCAAAA
ATCAATGAAGAATTGCAAGCAAATGGAGTTCAAATATATCATTTTCCAACTGATGATGAA
ACGGTAGCTGAGCAAAATAATACCATGAATTCTCACATTCCATTTGCAGTTGTAGGCAGC
ACTGAATTTGTCAAATTAGGAAGTAAAATGATTCGTGCTCGTCAATATCC

>g11619.t5 Gene=g11619 Length=256
MTEVDILNKLENHLRNMKLSGHVGFDSLPDQLVNKSVQNGFVFNILCISETGLGKSTLMD
SLFNTNFESTPSPHTLPSVKLKAQTFELQESNVRLKLTIVDTVGYGDQINKDDSFKSLVD
YIDQQYEAYLQEELKIKRSLSSYHDSRIHACLYFICPTGHGLKSLDLVCMKKLDTKVNII
PIIAKADTISKTELQKFKAKINEELQANGVQIYHFPTDDETVAEQNNTMNSHIPFAVVGS
TEFVKLGSKMIRARQY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g11619.t5 CDD cd01850 CDC_Septin 39 256 0.00
5 g11619.t5 Gene3D G3DSA:3.40.50.300 - 17 256 0.00
2 g11619.t5 PANTHER PTHR18884:SF69 LD28935P-RELATED 12 256 0.00
3 g11619.t5 PANTHER PTHR18884 SEPTIN 12 256 0.00
7 g11619.t5 PIRSF PIRSF006698 Septin 3 256 0.00
1 g11619.t5 Pfam PF00735 Septin 39 256 0.00
6 g11619.t5 ProSiteProfiles PS51719 Septin-type guanine nucleotide-binding (G) domain profile. 39 256 80.28
4 g11619.t5 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 23 219 0.00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005525 GTP binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed