Gene loci information

Transcript annotation

  • This transcript has been annotated as Glucose dehydrogenase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11631 g11631.t1 TTS g11631.t1 17501105 17501105
chr_1 g11631 g11631.t1 isoform g11631.t1 17501199 17504778
chr_1 g11631 g11631.t1 exon g11631.t1.exon1 17501199 17501392
chr_1 g11631 g11631.t1 cds g11631.t1.CDS1 17501199 17501392
chr_1 g11631 g11631.t1 exon g11631.t1.exon2 17501458 17501512
chr_1 g11631 g11631.t1 cds g11631.t1.CDS2 17501458 17501512
chr_1 g11631 g11631.t1 exon g11631.t1.exon3 17501565 17501932
chr_1 g11631 g11631.t1 cds g11631.t1.CDS3 17501565 17501932
chr_1 g11631 g11631.t1 exon g11631.t1.exon4 17501986 17502134
chr_1 g11631 g11631.t1 cds g11631.t1.CDS4 17501986 17502134
chr_1 g11631 g11631.t1 exon g11631.t1.exon5 17502198 17502785
chr_1 g11631 g11631.t1 cds g11631.t1.CDS5 17502198 17502785
chr_1 g11631 g11631.t1 exon g11631.t1.exon6 17502846 17502889
chr_1 g11631 g11631.t1 cds g11631.t1.CDS6 17502846 17502889
chr_1 g11631 g11631.t1 exon g11631.t1.exon7 17502944 17503089
chr_1 g11631 g11631.t1 cds g11631.t1.CDS7 17502944 17503089
chr_1 g11631 g11631.t1 exon g11631.t1.exon8 17504429 17504480
chr_1 g11631 g11631.t1 cds g11631.t1.CDS8 17504429 17504480
chr_1 g11631 g11631.t1 exon g11631.t1.exon9 17504551 17504778
chr_1 g11631 g11631.t1 cds g11631.t1.CDS9 17504551 17504778
chr_1 g11631 g11631.t1 TSS g11631.t1 NA NA

Sequences

>g11631.t1 Gene=g11631 Length=1824
ATGGTAACGTGTGATTGCCCTATTGGGAGCGCATCAACTGGACAAACATTAGCTTCACTA
TGTGGCGGTGGACAATTTATGCTCTTTATGGGCTTGCTTGAGGTGTTTATTAGATCACAA
TGTGATCTAGAAGATCCCTGCAATCGACCTAAACCAAAACTTAATCGTGAAATTGACTAT
GATTATGATTTTATAATAATCGGAGGTGGATCAGGAGGGAGCGTTACGGCGTCACGATTG
TCTGAAATATCGAATTGGAAAGTTCTTCTCATTGAAGCAGGGCCTGACGAACCAACTGGT
GCTCAAATTCCGAGTATGTTCTTGAACTATCTGGGTAGCGACATTGACTATAAATTTAAT
ACTGAACCGGAGAAAGGCGCTTGCTTGTCTTCGCATGAGCAACGGTGTTATTGGCCGCGT
GGAAAAGTACTCGGTGGAACATCTGTAATTAATGGAATGATGTATATCAGAGGAAATCCA
TCAGATTATGATAATTGGGAAGCAAATGGCAATCCAGGCTGGAAATGGAATGATGTGTTA
CCATATTTCAAGAAATCAGAAGATAATTTGCAAATTAACGAAGTTGATTCACAATTCCAT
AGCACTGGGGGTCTATTGCCTGTCTCTCGATTTCCTTATAATCCACCAATTTCAAAAGCT
ATTTTGCAAGCTGGTGAAGAGCTAGGATACAAAACTCAAGATCTCAATGGCAACAATCAA
ACTGGTTTTATGATCGCACAAACAAACAATAAAAATGGTATTCGATACAGTGCTGCGCGT
GCATTTTTACGCCCTGCATCTAAAAGACCTAACCTTCATATACTTGTCAATACGACTGCT
TCAAAAGTTCTCATCGATCCACGGTCAAAAACAGCAACTGGTGTTGAAATAATAACCCAT
GATGGTCACACACAACGAATTAATGCAAAGAAAGAAGTGATAATTGCAGGCGGTGCAGTA
AACAGTCCTCAAATTTTAATGTTGAGTGGTGTTGGTCCACGAGAAGAGCTAGAAAGAGTC
GGGATTAGAGTAGTAGCGGACTTGCAAGGTGTTGGAAGGAATCTTCATAATCATGTCGCA
TATTTTATAAATTTCTTCATTAATGACACTGATACAAGAGCTCTGAATTGGGCAACTGCA
ATGGAATATTTGCTCTTTAGAGATGGTTTAATGAGTGGAACTGGCGTCTCATCTGTTACT
GGAAAAATTGCAACTAAATATGCAGAAAAACCTAATGAACCTGACATTCAATACTATTTT
TGTGGATTTTTAGCTGATTGTGCTGTTAGTGGACAAGTAGGTGAATTGGGTAGCAATTAT
TCGCGATCAATTCAAATCTTCCCAGCATATCTTCATCCTAAGAGCAGAGGATATATCACA
TTAAAATCAACTGATCCACATGATGCACCGAAAATTTTTGCAAATTATCTTGATGAAGAG
CGTGATATCAAAGCACTTGTTGAAGGTATAAAGTTTGCCATAAAATTATCAGAAACATCA
GCATTGAAAGCATATGGAATGGAATTGGATAAAACTCCTGTGCCTGCATGTAAAAATTTC
ACTTTTGGAAGTCAAGAATATTGGGAATGTGCAGTTCGTCAAAATACAGGAGCTGAAAAT
CATCAAGCAGGAAGTTGCAAGATGGGCCCAGCACGTGATCCAATGAGTGTTGTCAATCAT
GAACTAAAAGTACATGGAATTAAAAACTTAAGAGTTATTGATGCTAGTGTTATGCCTGCA
GTAACTTCTGGTAATACAAATGCACCTGTAATTATGATTGCAGAAAAAGGTGCTGATTTA
ATCAAACGAGCTTGGGGAGCATAA

>g11631.t1 Gene=g11631 Length=607
MVTCDCPIGSASTGQTLASLCGGGQFMLFMGLLEVFIRSQCDLEDPCNRPKPKLNREIDY
DYDFIIIGGGSGGSVTASRLSEISNWKVLLIEAGPDEPTGAQIPSMFLNYLGSDIDYKFN
TEPEKGACLSSHEQRCYWPRGKVLGGTSVINGMMYIRGNPSDYDNWEANGNPGWKWNDVL
PYFKKSEDNLQINEVDSQFHSTGGLLPVSRFPYNPPISKAILQAGEELGYKTQDLNGNNQ
TGFMIAQTNNKNGIRYSAARAFLRPASKRPNLHILVNTTASKVLIDPRSKTATGVEIITH
DGHTQRINAKKEVIIAGGAVNSPQILMLSGVGPREELERVGIRVVADLQGVGRNLHNHVA
YFINFFINDTDTRALNWATAMEYLLFRDGLMSGTGVSSVTGKIATKYAEKPNEPDIQYYF
CGFLADCAVSGQVGELGSNYSRSIQIFPAYLHPKSRGYITLKSTDPHDAPKIFANYLDEE
RDIKALVEGIKFAIKLSETSALKAYGMELDKTPVPACKNFTFGSQEYWECAVRQNTGAEN
HQAGSCKMGPARDPMSVVNHELKVHGIKNLRVIDASVMPAVTSGNTNAPVIMIAEKGADL
IKRAWGA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g11631.t1 Gene3D G3DSA:3.50.50.60 - 62 602 2.2E-184
10 g11631.t1 Gene3D G3DSA:3.30.560.10 Glucose Oxidase 99 540 2.2E-184
3 g11631.t1 PANTHER PTHR11552:SF217 GLUCOSE DEHYDROGENASE [FAD, QUINONE] 11 606 2.0E-283
4 g11631.t1 PANTHER PTHR11552 GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE 11 606 2.0E-283
11 g11631.t1 PIRSF PIRSF000137 Alcohol_oxidase 36 607 8.0E-171
1 g11631.t1 Pfam PF00732 GMC oxidoreductase 62 359 1.4E-96
2 g11631.t1 Pfam PF05199 GMC oxidoreductase 453 596 7.3E-41
8 g11631.t1 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 141 164 -
7 g11631.t1 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 318 332 -
6 g11631.t1 SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain 58 606 2.96E-86
5 g11631.t1 SUPERFAMILY SSF54373 FAD-linked reductases, C-terminal domain 354 545 1.08E-37

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors MF
GO:0050660 flavin adenine dinucleotide binding MF
GO:0055114 NA NA

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed