General information for g11631.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glucose dehydrogenase.
Parent gene
- The parent gene g11631 is located on chr_1: 17502251..17507873 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11631 | g11631.t3 | TTS | g11631.t3 | 17501105 | 17501105 |
| chr_1 | g11631 | g11631.t3 | isoform | g11631.t3 | 17501199 | 17501925 |
| chr_1 | g11631 | g11631.t3 | exon | g11631.t3.exon1 | 17501199 | 17501392 |
| chr_1 | g11631 | g11631.t3 | cds | g11631.t3.CDS1 | 17501199 | 17501392 |
| chr_1 | g11631 | g11631.t3 | exon | g11631.t3.exon2 | 17501458 | 17501512 |
| chr_1 | g11631 | g11631.t3 | cds | g11631.t3.CDS2 | 17501458 | 17501512 |
| chr_1 | g11631 | g11631.t3 | exon | g11631.t3.exon3 | 17501565 | 17501925 |
| chr_1 | g11631 | g11631.t3 | cds | g11631.t3.CDS3 | 17501565 | 17501621 |
| chr_1 | g11631 | g11631.t3 | TSS | g11631.t3 | NA | NA |
Sequences
>g11631.t3 Gene=g11631 Length=610
TAAATATGCAGAAAAACCTAATGAACCTGACATTCAATACTATTTTTGTGGATTTTTAGC
TGATTGTGCTGTTAGTGGACAAGTAGGTGAATTGGGTAGCAATTATTCGCGATCAATTCA
AATCTTCCCAGCATATCTTCATCCTAAGAGCAGAGGATATATCACATTAAAATCAACTGA
TCCACATGATGCACCGAAAATTTTTGCAAATTATCTTGATGAAGAGCGTGATATCAAAGC
ACTTGTTGAAGGTATAAAGTTTGCCATAAAATTATCAGAAACATCAGCATTGAAAGCATA
TGGAATGGAATTGGATAAAACTCCTGTGCCTGCATGTAAAAATTTCACTTTTGGAAGTCA
AGAATATTGGGAATGTGCAGTTCGTCAAAATACAGGAGCTGAAAATCATCAAGCAGGAAG
TTGCAAGATGGGCCCAGCACGTGATCCAATGAGTGTTGTCAATCATGAACTAAAAGTACA
TGGAATTAAAAACTTAAGAGTTATTGATGCTAGTGTTATGCCTGCAGTAACTTCTGGTAA
TACAAATGCACCTGTAATTATGATTGCAGAAAAAGGTGCTGATTTAATCAAACGAGCTTG
GGGAGCATAA
>g11631.t3 Gene=g11631 Length=101
MELDKTPVPACKNFTFGSQEYWECAVRQNTGAENHQAGSCKMGPARDPMSVVNHELKVHG
IKNLRVIDASVMPAVTSGNTNAPVIMIAEKGADLIKRAWGA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g11631.t3 | Gene3D | G3DSA:3.50.50.60 | - | 4 | 101 | 0 |
| 2 | g11631.t3 | PANTHER | PTHR11552:SF217 | GLUCOSE DEHYDROGENASE [FAD, QUINONE] | 1 | 100 | 0 |
| 3 | g11631.t3 | PANTHER | PTHR11552 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE | 1 | 100 | 0 |
| 1 | g11631.t3 | Pfam | PF05199 | GMC oxidoreductase | 5 | 90 | 0 |
| 4 | g11631.t3 | SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 34 | 99 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | MF |
| GO:0050660 | flavin adenine dinucleotide binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed