Gene loci information

Transcript annotation

  • This transcript has been annotated as Glucose dehydrogenase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11631 g11631.t4 TTS g11631.t4 17501105 17501105
chr_1 g11631 g11631.t4 isoform g11631.t4 17501199 17502251
chr_1 g11631 g11631.t4 exon g11631.t4.exon1 17501199 17501392
chr_1 g11631 g11631.t4 cds g11631.t4.CDS1 17501199 17501392
chr_1 g11631 g11631.t4 exon g11631.t4.exon2 17501458 17501512
chr_1 g11631 g11631.t4 cds g11631.t4.CDS2 17501458 17501512
chr_1 g11631 g11631.t4 exon g11631.t4.exon3 17501565 17501932
chr_1 g11631 g11631.t4 cds g11631.t4.CDS3 17501565 17501932
chr_1 g11631 g11631.t4 exon g11631.t4.exon4 17501986 17502134
chr_1 g11631 g11631.t4 cds g11631.t4.CDS4 17501986 17502052
chr_1 g11631 g11631.t4 exon g11631.t4.exon5 17502198 17502251
chr_1 g11631 g11631.t4 TSS g11631.t4 NA NA

Sequences

>g11631.t4 Gene=g11631 Length=820
AGAGCTAGAAAGAGTCGGGATTAGAGTAGTAGCGGACTTGCAAGGTGTTGGAAGGAATCT
TCATAATCATGTCGCATATTTTATAAATTTCTTCATTAATGACACTGATACAAGAGCTCT
GAATTGGGCAACTGCAATGGAATATTTGCTCTTTAGAGATGGTTTAATGAGTGGAACTGG
CGTCTCATCTGTTACTGGAAAAATTGCAACTAAATATGCAGAAAAACCTAATGAACCTGA
CATTCAATACTATTTTTGTGGATTTTTAGCTGATTGTGCTGTTAGTGGACAAGTAGGTGA
ATTGGGTAGCAATTATTCGCGATCAATTCAAATCTTCCCAGCATATCTTCATCCTAAGAG
CAGAGGATATATCACATTAAAATCAACTGATCCACATGATGCACCGAAAATTTTTGCAAA
TTATCTTGATGAAGAGCGTGATATCAAAGCACTTGTTGAAGGTATAAAGTTTGCCATAAA
ATTATCAGAAACATCAGCATTGAAAGCATATGGAATGGAATTGGATAAAACTCCTGTGCC
TGCATGTAAAAATTTCACTTTTGGAAGTCAAGAATATTGGGAATGTGCAGTTCGTCAAAA
TACAGGAGCTGAAAATCATCAAGCAGGAAGTTGCAAGATGGGCCCAGCACGTGATCCAAT
GAGTGTTGTCAATCATGAACTAAAAGTACATGGAATTAAAAACTTAAGAGTTATTGATGC
TAGTGTTATGCCTGCAGTAACTTCTGGTAATACAAATGCACCTGTAATTATGATTGCAGA
AAAAGGTGCTGATTTAATCAAACGAGCTTGGGGAGCATAA

>g11631.t4 Gene=g11631 Length=227
MEYLLFRDGLMSGTGVSSVTGKIATKYAEKPNEPDIQYYFCGFLADCAVSGQVGELGSNY
SRSIQIFPAYLHPKSRGYITLKSTDPHDAPKIFANYLDEERDIKALVEGIKFAIKLSETS
ALKAYGMELDKTPVPACKNFTFGSQEYWECAVRQNTGAENHQAGSCKMGPARDPMSVVNH
ELKVHGIKNLRVIDASVMPAVTSGNTNAPVIMIAEKGADLIKRAWGA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g11631.t4 Gene3D G3DSA:3.30.560.10 Glucose Oxidase 11 150 0
6 g11631.t4 Gene3D G3DSA:3.50.50.60 - 151 226 0
2 g11631.t4 PANTHER PTHR11552:SF217 GLUCOSE DEHYDROGENASE [FAD, QUINONE] 1 226 0
3 g11631.t4 PANTHER PTHR11552 GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE 1 226 0
1 g11631.t4 Pfam PF05199 GMC oxidoreductase 73 216 0
4 g11631.t4 SUPERFAMILY SSF54373 FAD-linked reductases, C-terminal domain 1 165 0
5 g11631.t4 SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain 161 225 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors MF
GO:0050660 flavin adenine dinucleotide binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed