General information for g11631.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Glucose dehydrogenase.
Parent gene
- The parent gene g11631 is located on chr_1: 17502251..17507873 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11631 | g11631.t6 | TTS | g11631.t6 | 17501105 | 17501105 |
| chr_1 | g11631 | g11631.t6 | isoform | g11631.t6 | 17501579 | 17503089 |
| chr_1 | g11631 | g11631.t6 | exon | g11631.t6.exon1 | 17501579 | 17501932 |
| chr_1 | g11631 | g11631.t6 | cds | g11631.t6.CDS1 | 17501580 | 17501932 |
| chr_1 | g11631 | g11631.t6 | exon | g11631.t6.exon2 | 17501986 | 17502134 |
| chr_1 | g11631 | g11631.t6 | cds | g11631.t6.CDS2 | 17501986 | 17502134 |
| chr_1 | g11631 | g11631.t6 | exon | g11631.t6.exon3 | 17502198 | 17502785 |
| chr_1 | g11631 | g11631.t6 | cds | g11631.t6.CDS3 | 17502198 | 17502785 |
| chr_1 | g11631 | g11631.t6 | exon | g11631.t6.exon4 | 17502846 | 17502889 |
| chr_1 | g11631 | g11631.t6 | cds | g11631.t6.CDS4 | 17502846 | 17502889 |
| chr_1 | g11631 | g11631.t6 | exon | g11631.t6.exon5 | 17502944 | 17503089 |
| chr_1 | g11631 | g11631.t6 | cds | g11631.t6.CDS5 | 17502944 | 17503054 |
| chr_1 | g11631 | g11631.t6 | TSS | g11631.t6 | NA | NA |
Sequences
>g11631.t6 Gene=g11631 Length=1281
GGCCTGACGAACCAACTGGTGCTCAAATTCCGAGTATGTTCTTGAACTATCTGGGTAGCG
ACATTGACTATAAATTTAATACTGAACCGGAGAAAGGCGCTTGCTTGTCTTCGCATGAGC
AACGGTGTTATTGGCCGCGTGGAAAAGTACTCGGTGGAACATCTGTAATTAATGGAATGA
TGTATATCAGAGGAAATCCATCAGATTATGATAATTGGGAAGCAAATGGCAATCCAGGCT
GGAAATGGAATGATGTGTTACCATATTTCAAGAAATCAGAAGATAATTTGCAAATTAACG
AAGTTGATTCACAATTCCATAGCACTGGGGGTCTATTGCCTGTCTCTCGATTTCCTTATA
ATCCACCAATTTCAAAAGCTATTTTGCAAGCTGGTGAAGAGCTAGGATACAAAACTCAAG
ATCTCAATGGCAACAATCAAACTGGTTTTATGATCGCACAAACAAACAATAAAAATGGTA
TTCGATACAGTGCTGCGCGTGCATTTTTACGCCCTGCATCTAAAAGACCTAACCTTCATA
TACTTGTCAATACGACTGCTTCAAAAGTTCTCATCGATCCACGGTCAAAAACAGCAACTG
GTGTTGAAATAATAACCCATGATGGTCACACACAACGAATTAATGCAAAGAAAGAAGTGA
TAATTGCAGGCGGTGCAGTAAACAGTCCTCAAATTTTAATGTTGAGTGGTGTTGGTCCAC
GAGAAGAGCTAGAAAGAGTCGGGATTAGAGTAGTAGCGGACTTGCAAGGTGTTGGAAGGA
ATCTTCATAATCATGTCGCATATTTTATAAATTTCTTCATTAATGACACTGATACAAGAG
CTCTGAATTGGGCAACTGCAATGGAATATTTGCTCTTTAGAGATGGTTTAATGAGTGGAA
CTGGCGTCTCATCTGTTACTGGAAAAATTGCAACTAAATATGCAGAAAAACCTAATGAAC
CTGACATTCAATACTATTTTTGTGGATTTTTAGCTGATTGTGCTGTTAGTGGACAAGTAG
GTGAATTGGGTAGCAATTATTCGCGATCAATTCAAATCTTCCCAGCATATCTTCATCCTA
AGAGCAGAGGATATATCACATTAAAATCAACTGATCCACATGATGCACCGAAAATTTTTG
CAAATTATCTTGATGAAGAGCGTGATATCAAAGCACTTGTTGAAGGTATAAAGTTTGCCA
TAAAATTATCAGAAACATCAGCATTGAAAGCATATGGAATGGAATTGGATAAAACTCCTG
TGCCTGCATGTAAAAATTTCA
>g11631.t6 Gene=g11631 Length=415
MFLNYLGSDIDYKFNTEPEKGACLSSHEQRCYWPRGKVLGGTSVINGMMYIRGNPSDYDN
WEANGNPGWKWNDVLPYFKKSEDNLQINEVDSQFHSTGGLLPVSRFPYNPPISKAILQAG
EELGYKTQDLNGNNQTGFMIAQTNNKNGIRYSAARAFLRPASKRPNLHILVNTTASKVLI
DPRSKTATGVEIITHDGHTQRINAKKEVIIAGGAVNSPQILMLSGVGPREELERVGIRVV
ADLQGVGRNLHNHVAYFINFFINDTDTRALNWATAMEYLLFRDGLMSGTGVSSVTGKIAT
KYAEKPNEPDIQYYFCGFLADCAVSGQVGELGSNYSRSIQIFPAYLHPKSRGYITLKSTD
PHDAPKIFANYLDEERDIKALVEGIKFAIKLSETSALKAYGMELDKTPVPACKNF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g11631.t6 | Gene3D | G3DSA:3.50.50.60 | - | 1 | 130 | 3.1E-32 |
| 9 | g11631.t6 | Gene3D | G3DSA:3.50.50.60 | - | 131 | 278 | 4.9E-43 |
| 11 | g11631.t6 | Gene3D | G3DSA:3.30.560.10 | Glucose Oxidase | 292 | 410 | 2.1E-15 |
| 3 | g11631.t6 | PANTHER | PTHR11552:SF217 | GLUCOSE DEHYDROGENASE [FAD, QUINONE] | 1 | 414 | 1.5E-183 |
| 4 | g11631.t6 | PANTHER | PTHR11552 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE | 1 | 414 | 1.5E-183 |
| 1 | g11631.t6 | Pfam | PF00732 | GMC oxidoreductase | 3 | 254 | 3.2E-82 |
| 2 | g11631.t6 | Pfam | PF05199 | GMC oxidoreductase | 348 | 398 | 1.7E-9 |
| 8 | g11631.t6 | ProSitePatterns | PS00623 | GMC oxidoreductases signature 1. | 36 | 59 | - |
| 7 | g11631.t6 | ProSitePatterns | PS00624 | GMC oxidoreductases signature 2. | 213 | 227 | - |
| 6 | g11631.t6 | SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 9 | 293 | 8.85E-53 |
| 5 | g11631.t6 | SUPERFAMILY | SSF54373 | FAD-linked reductases, C-terminal domain | 249 | 412 | 2.26E-30 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | MF |
| GO:0050660 | flavin adenine dinucleotide binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed