General information for g11637.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Fructose-bisphosphate aldolase.
Parent gene
- The parent gene g11637 is located on chr_1: 17536036..17544729 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11637 | g11637.t8 | TSS | g11637.t8 | 17529534 | 17529534 |
| chr_1 | g11637 | g11637.t8 | isoform | g11637.t8 | 17529758 | 17530680 |
| chr_1 | g11637 | g11637.t8 | exon | g11637.t8.exon1 | 17529758 | 17530001 |
| chr_1 | g11637 | g11637.t8 | cds | g11637.t8.CDS1 | 17529971 | 17530001 |
| chr_1 | g11637 | g11637.t8 | exon | g11637.t8.exon2 | 17530300 | 17530680 |
| chr_1 | g11637 | g11637.t8 | cds | g11637.t8.CDS2 | 17530300 | 17530679 |
| chr_1 | g11637 | g11637.t8 | TTS | g11637.t8 | NA | NA |
Sequences
>g11637.t8 Gene=g11637 Length=625
GATATTGGATTAGAGAATAACGAAGAAAATCGTCGTGCATATCGTGAATTACTTTTCACC
ACTGATGACGCTATTGCCACCAACATTTCAGGTGTCATTTTGTTCCATGAGACCGTTTAC
CAAAAAGCTGCCTGTGGAACCTCATTCATTGATATCTTGAAGAAGAAAGGTATCATTCCT
GGTATCAAAGTCGACAGCGGTGTTGTTGATTTAATGGCAAGCGAAGGAGAATGCACAACT
CAAGGTCTCGATAACTTGGCACAACGTTGTGCTCAGTACAAGAAGGATGGCTGTGACTTC
GCCAAGTGGCGTTGTGTTTTGAAGATTGGCAAAAACACACCCAGCTACCAAGCTATTTTG
GAAAATGCCAATGTCTTGGCTCGCTATGCTTCAATCTGTCAATCACAAGGTATTGTTCCC
ATTGTTGAGCCTGAAATCTTGCCCGATGGTGACCACGATCTTGAGCGTTGCCAGAAAGTC
ACTGAAGTTGTCTTGGCTGCTGTTTACAAAGCACTCAGCGATCATCATGTCTTCTTGGAA
GGTACATTATTGAAACCAAACATGGTCACAGCTGGTATGCAATTTAAGGGAACTAAACCA
ACACCTGAACAAATTGCTGAAGCTA
>g11637.t8 Gene=g11637 Length=137
MASEGECTTQGLDNLAQRCAQYKKDGCDFAKWRCVLKIGKNTPSYQAILENANVLARYAS
ICQSQGIVPIVEPEILPDGDHDLERCQKVTEVVLAAVYKALSDHHVFLEGTLLKPNMVTA
GMQFKGTKPTPEQIAEA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11637.t8 | Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 1 | 137 | 4.7E-69 |
| 2 | g11637.t8 | PANTHER | PTHR11627:SF3 | FRUCTOSE-BISPHOSPHATE ALDOLASE C | 3 | 136 | 7.5E-69 |
| 3 | g11637.t8 | PANTHER | PTHR11627 | FRUCTOSE-BISPHOSPHATE ALDOLASE | 3 | 136 | 7.5E-69 |
| 1 | g11637.t8 | Pfam | PF00274 | Fructose-bisphosphate aldolase class-I | 2 | 136 | 3.1E-71 |
| 5 | g11637.t8 | ProSitePatterns | PS00158 | Fructose-bisphosphate aldolase class-I active site. | 106 | 116 | - |
| 4 | g11637.t8 | SUPERFAMILY | SSF51569 | Aldolase | 4 | 136 | 7.64E-56 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004332 | fructose-bisphosphate aldolase activity | MF |
| GO:0006096 | glycolytic process | BP |
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
