General information for g11647.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Transient receptor potential cation channel subfamily M member-like 2.
Parent gene
- The parent gene g11647 is located on chr_1: 17612919..17613992 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11647 | g11647.t2 | TTS | g11647.t2 | 17612144 | 17612144 |
| chr_1 | g11647 | g11647.t2 | isoform | g11647.t2 | 17612890 | 17613992 |
| chr_1 | g11647 | g11647.t2 | exon | g11647.t2.exon1 | 17612890 | 17613992 |
| chr_1 | g11647 | g11647.t2 | cds | g11647.t2.CDS1 | 17612919 | 17613218 |
| chr_1 | g11647 | g11647.t2 | TSS | g11647.t2 | 17613971 | 17613971 |
Sequences
>g11647.t2 Gene=g11647 Length=1103
TCTGTTGATTTTGTTTATGTTATGCTTTATTTTGATGAATTTTCGAGTGGATATTTTTTC
TAATAGATCAAACAAAATTAATTATTTCCAAATTCTTCTCTACTTTACATATATCGAAAT
TTGCAGTGAAATGAATAAAATTTTTAAGCATATTGTGTGTCGTAATCAACTTTATGCAAA
TCAAATTCAAAGATTTCCAGTTCCAGATGAATTTGTTCCTTGGTCAGTTAATTATGACAA
TTACAAACCACAATTTTATGAATCGCCCACATTAAATGGTAAACCATGGGCTGATGAACC
ATTGGACAGTGAAAATTTTAAACCAAAATATAATCAACTTGATGGTAATGTTAACAGAAA
AAGTCACATTGGAGAATATAAAATTGTGAATCGAATGCCTCAAAATATATTTGGAAGAAC
AGGAATTTGTGGTAGAGGTGTTTTAGGAAGGTAAGAAAAAAAATCGGCACATGATGAAAT
AAAAATGAAAAATAAATTTTTATCATTATAAATTTAGATTTGGTCCAAATCATGCAGCAG
ATCCAATTGTTTCTACATGGAAAAGAGATGAAAATAACAAAATTGTTAAACATTCTGATG
GAAAAGCAATTTTAAAAGTTTTATGCATCCAAAGAGGTGATACTAATGAAATTGCATTGC
CTGGTGGAATGGTGCGTAACTTTATTTTTTAATTGCAAAATAAAAATTTATCGATTTCTT
TTGTGCTAGGTCGATCCTGGAGAAAATGTTTCAGTAACACTTAAGCGGGAATTTATGGAG
GAAACTTTAAACAATAAAATAGATGAATCAGTTCTTGATGATTTTTTTAGTCATGGAATT
GAAGTTTATAAAGGCTATATCGATGATCCTAGAAATACAGATAATGCTTGGATGGAAACT
GTTGCATTCAATTTTCACGATGAAAGTGGAGACTTTTTGAAGCAATTAAACTTTGAAGCA
GGCGATGATGCAGTAGGGATTCATTGGATTGATGTATCTCGAGATGTAAAATTATATGCA
AGCCATTTAAAATTGATTGAAGCAACTGCGCAGTTAAGAAATGCTCATTTTTAAAAAATT
CTTTCTCAATTTTTTTTCTTACT
>g11647.t2 Gene=g11647 Length=99
MEETLNNKIDESVLDDFFSHGIEVYKGYIDDPRNTDNAWMETVAFNFHDESGDFLKQLNF
EAGDDAVGIHWIDVSRDVKLYASHLKLIEATAQLRNAHF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g11647.t2 | Gene3D | G3DSA:3.90.79.10 | Nucleoside Triphosphate Pyrophosphohydrolase | 1 | 99 | 0 |
| 1 | g11647.t2 | PANTHER | PTHR13030:SF13 | - | 6 | 99 | 0 |
| 2 | g11647.t2 | PANTHER | PTHR13030 | NUDIX HYDROLASE | 6 | 99 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0047631 | ADP-ribose diphosphatase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
