Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Ras-like protein 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11648 g11648.t6 TSS g11648.t6 17614254 17614254
chr_1 g11648 g11648.t6 isoform g11648.t6 17614363 17620081
chr_1 g11648 g11648.t6 exon g11648.t6.exon1 17614363 17614465
chr_1 g11648 g11648.t6 exon g11648.t6.exon2 17614812 17614845
chr_1 g11648 g11648.t6 exon g11648.t6.exon3 17614899 17614998
chr_1 g11648 g11648.t6 exon g11648.t6.exon4 17618780 17619035
chr_1 g11648 g11648.t6 cds g11648.t6.CDS1 17618789 17619035
chr_1 g11648 g11648.t6 exon g11648.t6.exon5 17619091 17620081
chr_1 g11648 g11648.t6 cds g11648.t6.CDS2 17619091 17619218
chr_1 g11648 g11648.t6 TTS g11648.t6 17620077 17620077

Sequences

>g11648.t6 Gene=g11648 Length=1484
ATGTCAAAGAATAATCAAACAAGTGTGCAAACTTATAAACTCGTAGTTGTTGGCAGTGGT
GGTGTCGGAAAATCCTGTATTACTATTCAATTCATTCAAGCAAAGCTACTTTTGTAGTGA
CTATGATCCGACTATAGGCTTTTTATCAATTTCACAGAGGATAGTTATACGAAGAGACTT
GTAATTGATGAAGTTGTAGCAAAGCTTGATATTCTTGATACAGCAGGCCAAGAGGAGTTT
TCTGCAATGCGTGAACAATATATGAGATCGGGTGAAGGATTTCTTCTAGTATTCAGTGTC
ACAGATTATGCAAGTTTCGAAGAGATTTATAAATTTCATCGACAAATTTTACGTGTGAAA
GATCGTGATGAATTTCCTATGCTTATGATTGGTAACAAGTCAGATTTAGAAGCACAACGA
GTTGTTTCTATTGATAAAGCACAAGAACTTAGTCGTCAACTTAAAATTCCATATCTTGAA
TGTAGTGCAAAAGTGAGAATCAATGTTGATCAAGCATTCATCGAACTTGTGCGTATTGTT
AGAAGATTTCAAGAATCTGAACGGCCAGTTATCAATTCAACAAAAGGAAAACCTAAAAAT
TCCAAATGCTGTCTATTATAATTTATTGATAAAAAGCCATAAAAATCCTTTAACATTTCA
TCAAAGAGCATTTAATGTGCTAAATGTCAACGTTTACTTTTTAAAAATTTATGTCTACAA
TGTGTTGTTGTTATAATCAAAATGTGCCTCGTACAAATAATGTGTTTTAATAATTAATAT
TTAAAAAAGTAATATTTTGCAATGAATCTTCCAAATATCATACATCAATATGTATAATCA
AAGAAAACACAAAAACTTATAAATCAGTCTTGTTTATCTATATTTCTTTTCATTTAATAA
AAACAAAAACTAATAGAAAATATTATAAATTTGGTGCTTCATAAAGAAAAAAAGAAAAAA
GGATGAACGTGTCATGCATACAAAATATAATAAGTCAATGAAGAAAATGATCATACTTAT
CAATCTACAATATGGTTCTGAATATTAACTTAATGTTGCCAAAATTTCAAGAATATAAAA
AATACAATTAAATGAAACTAGTTAGATTTAATCATGAATAACGATGTATGGTATTAGATA
AAAAAAACTTAATGCATCTCTAATAATAACAAAAAACAAAATGTTTTACATGAATAGTAC
TCACACTGATGATTCATGAGCAGTGCAAGTAAAATAGCTTTCAAAACTAGCACATTATTA
ACTAGATTTAATGTGCCTAATCATGTGACAACAAGTATATATACATCTTAAATATCAACT
AATTTTTGATAAAGAAAAATTTAATGATTTTTAAATCGATTCATTTTTTATTAAAAAATA
ATATCTATAGATATTTTTTTCTGAAAAATTATTAAATAGATGGTATTAAAATGTTTTTGA
AACAAAAATTAAATTAACAAAATAAATTATTAATATTTTTCAAA

>g11648.t6 Gene=g11648 Length=124
MREQYMRSGEGFLLVFSVTDYASFEEIYKFHRQILRVKDRDEFPMLMIGNKSDLEAQRVV
SIDKAQELSRQLKIPYLECSAKVRINVDQAFIELVRIVRRFQESERPVINSTKGKPKNSK
CCLL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g11648.t6 Gene3D G3DSA:3.40.50.300 - 1 106 0.0000000
2 g11648.t6 PANTHER PTHR24070:SF396 RAS-RELATED PROTEIN R-RAS2 1 122 0.0000000
3 g11648.t6 PANTHER PTHR24070 RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY 1 122 0.0000000
5 g11648.t6 PRINTS PR00449 Transforming protein P21 ras signature 41 54 0.0000000
4 g11648.t6 PRINTS PR00449 Transforming protein P21 ras signature 76 98 0.0000000
1 g11648.t6 Pfam PF00071 Ras family 1 98 0.0000000
11 g11648.t6 ProSiteProfiles PS51421 small GTPase Ras family profile. 1 124 27.3810000
7 g11648.t6 SMART SM00173 ras_sub_4 1 101 0.0000000
8 g11648.t6 SMART SM00175 rab_sub_5 1 100 0.0000001
9 g11648.t6 SMART SM00174 rho_sub_3 3 101 0.0092000
6 g11648.t6 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1 104 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0007165 signal transduction BP
GO:0005525 GTP binding MF
GO:0003924 GTPase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values