Gene loci information

Transcript annotation

  • This transcript has been annotated as Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11659 g11659.t1 TSS g11659.t1 17657684 17657684
chr_1 g11659 g11659.t1 isoform g11659.t1 17657744 17659629
chr_1 g11659 g11659.t1 exon g11659.t1.exon1 17657744 17657812
chr_1 g11659 g11659.t1 cds g11659.t1.CDS1 17657744 17657812
chr_1 g11659 g11659.t1 exon g11659.t1.exon2 17657883 17658437
chr_1 g11659 g11659.t1 cds g11659.t1.CDS2 17657883 17658437
chr_1 g11659 g11659.t1 exon g11659.t1.exon3 17658503 17658970
chr_1 g11659 g11659.t1 cds g11659.t1.CDS3 17658503 17658970
chr_1 g11659 g11659.t1 exon g11659.t1.exon4 17659042 17659430
chr_1 g11659 g11659.t1 cds g11659.t1.CDS4 17659042 17659430
chr_1 g11659 g11659.t1 exon g11659.t1.exon5 17659503 17659629
chr_1 g11659 g11659.t1 cds g11659.t1.CDS5 17659503 17659629
chr_1 g11659 g11659.t1 TTS g11659.t1 17659931 17659931

Sequences

>g11659.t1 Gene=g11659 Length=1608
ATGGCTCTACGAATTCCAGCATTACCGGTACCAGAAATGCTTGAAACAAATTTGAATCAT
TCGTTTAAATTCACTAATCAAAATGATCAGAAGAAGAAAAAGCGTCCACCAAAACTATAT
CCAAAAGAAGTAAACTTCTTGCGTAATGTCAATCAGGAGCCACATGCAGTATCATTCCGA
GATTCGTCGTTATGCTCAAACACATCCACACCATTGTCCAAATCAAAAAATTCCTTGACG
GATCTTTCAAATAGCTTCTATGATAAAACCAAGAATGAGTCATATTTTGAACAGTGCTTT
GAGACATGCTGTAAGATTGGTGAAGGCTCATTTGGAGAAGTTTTCAAAGTGCTTTGCAAG
GAAGACGGGAAATATTATGCTATTAAAAAATTAAGATTCTTTCATCGCGGCGTTAATTAC
AGAAAAGAAAAAATGCAAGAAGTTCGGAGATATGAAGAATTTTCTGGAAACGACTATTGT
TTATCTCTTTACAAAGCTTGGGAACAATTTGATTGTCTTTTCATGCAAATGGAACTTTGT
TGTGGAAGTGTTGAAGATTATGTTGAGAAAGTGAAAAAAGTTTCGGAATCATTTGTCTGG
TCATTTCTTTTCGATATGCTTATGGCATTAAAATGTCTTCATGATCGAAATCTTATTCAT
CTGGATTTAAAATTGGATAATGTATTGATGACTAATAACAATCGATGTAAGCTGGCTGAT
TTTGGATTAGTTTTTGATCTGAAAAATTCAGATCGTAGTCGTGCTGTTGAAGGAGATAGC
CGATATTTGGCACCAGAACTTCTTAACAATAACTACTGTCTTGCAAATGATATATTTAGT
CTTGGCATTGCTCTCTTAGAATTAGCAACAAATCTCGAATTACCTTCAAGTGGAAATTTA
TGGCAAGAGTTAAGATCTGGAATTATACCTTTTAACGTTAAAAATAAATTATCACCAGAA
TTACTGAAGATCATATCACAAATGATGGATCCGGATCCAATTCAAAGACCAACTGTCGAT
CAACTGCTTAAAAATAAGAAACTAGTTAGAATGAGGAAGATGCGAGAGCTTCAAAAATCT
TTGAGAGCTTTAATAATGCCACTAATCAATGCTTGCGATTTTATAAAATCGTACATTATT
TTCGCAATACTTTTCGTTTTCAACTTCTTTCAACTGAAGGATAAAACAAAAAAGAGCTAC
AAATATAACATTCCTGCAAATAATATTGGCAATATTAGCGACGATGATGAATCAAACACT
AAAAGTTTGTCTATTCACAACAGTAGCCGCTTAAGTCAAATTTCAATTGCTGATGATGAT
GATGACAGTAATAATGAGAGCAATGTAACTCCTACGCTTAACAATTCTATTCCGCGAATT
ACACCAGAAATTAAAATCATTAATTCAACTCCCCTCAATCATTACAATCATCAAAATCAA
GTGTCTAGTCGTAAATTTAGACGAGATTTAACAAAGTCATGTTTTGAAAATGATGATGGC
ATATGTTCACCTGTGGTTTCGCGAAATTCATCTTTGAGGAACTCATCACAAAACAATCAT
TCAATAATTAGTAAAAAACTACTTTTCCATGATGAGGATGATGAATAA

>g11659.t1 Gene=g11659 Length=535
MALRIPALPVPEMLETNLNHSFKFTNQNDQKKKKRPPKLYPKEVNFLRNVNQEPHAVSFR
DSSLCSNTSTPLSKSKNSLTDLSNSFYDKTKNESYFEQCFETCCKIGEGSFGEVFKVLCK
EDGKYYAIKKLRFFHRGVNYRKEKMQEVRRYEEFSGNDYCLSLYKAWEQFDCLFMQMELC
CGSVEDYVEKVKKVSESFVWSFLFDMLMALKCLHDRNLIHLDLKLDNVLMTNNNRCKLAD
FGLVFDLKNSDRSRAVEGDSRYLAPELLNNNYCLANDIFSLGIALLELATNLELPSSGNL
WQELRSGIIPFNVKNKLSPELLKIISQMMDPDPIQRPTVDQLLKNKKLVRMRKMRELQKS
LRALIMPLINACDFIKSYIIFAILFVFNFFQLKDKTKKSYKYNIPANNIGNISDDDESNT
KSLSIHNSSRLSQISIADDDDDSNNESNVTPTLNNSIPRITPEIKIINSTPLNHYNHQNQ
VSSRKFRRDLTKSCFENDDGICSPVVSRNSSLRNSSQNNHSIISKKLLFHDEDDE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g11659.t1 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 67 177 1.5E-28
6 g11659.t1 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 178 350 2.4E-45
2 g11659.t1 PANTHER PTHR11042 EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 48 353 2.0E-76
3 g11659.t1 PANTHER PTHR11042:SF99 MEMBRANE-ASSOCIATED TYROSINE- AND THREONINE-SPECIFIC CDC2-INHIBITORY KINASE 48 353 2.0E-76
1 g11659.t1 Pfam PF00069 Protein kinase domain 102 346 4.3E-46
8 g11659.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 373 -
9 g11659.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 374 392 -
7 g11659.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 393 535 -
12 g11659.t1 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 106 130 -
11 g11659.t1 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 218 230 -
14 g11659.t1 ProSiteProfiles PS50011 Protein kinase domain profile. 100 348 36.725
13 g11659.t1 SMART SM00220 serkin_6 100 349 6.8E-45
4 g11659.t1 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 97 359 6.34E-62
10 g11659.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 368 390 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values