General information for g11673.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11673 is located on chr_1: 17738937..17742226 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11673 | g11673.t4 | isoform | g11673.t4 | 17737561 | 17738937 |
| chr_1 | g11673 | g11673.t4 | exon | g11673.t4.exon1 | 17737561 | 17738544 |
| chr_1 | g11673 | g11673.t4 | cds | g11673.t4.CDS1 | 17737749 | 17738150 |
| chr_1 | g11673 | g11673.t4 | exon | g11673.t4.exon2 | 17738608 | 17738937 |
| chr_1 | g11673 | g11673.t4 | TSS | g11673.t4 | NA | NA |
| chr_1 | g11673 | g11673.t4 | TTS | g11673.t4 | NA | NA |
Sequences
>g11673.t4 Gene=g11673 Length=1314
TCTTTACAAGACAAAATAGTTCCGACAATGATTAAAATTTTAAATCTTGAAACTGAAAAC
ACTAACGCACCAACACAAGATATTGCCTTAGATGTCTTAGAAACTATCGTCAAATACTCC
AGAGCTCCATTGAGTCCACTTTTGATTGAGCAAGCATTTCCCGCCGTTGTAAATGCAATT
TTAAGAACTGAAGATAATTCAGTTTTACAATCGGGTGGAGAGTGTCTTCGAGCATTTTTG
TTTGTGTCAGCTGAACAAGTTTGTACATTTCAAAATGGCATGGGTCTTTCTTCGATTTTG
GAAGTCTTGACAATTTTGCTTAATCCTAAGTTTTTTTAAGTCGACTGAATCAAGTGCAAC
ATTTGTTGGTCGTCTTGTTATTACACTTATCACCAAAGCTGGAAATTTATTAGGAGATAA
GATTGATTTGCTATTGAAAGCTGCTTTAAGTAAAATGCAACTCGTTGTTTCGCTTCATGT
TAATATGTCTCTTATAATGATTTTTGCACATTTATTTCTTATTCAAATTGATGCGGTTAT
GAATTTTCTTAGTTGCATTCCTGGTTAGTAAAAATTTAATGTTATTCCTTAATGTATGAA
ATAAATATTGTTCTTTTATAATATTATAGGACCGACAGGCGAGCCTGCAATCAATTTCGT
ATTTTCTAATTGGTTAACTCGTCAGCATTCTTTTTATGGAACTTATGAGCGAAAAGTAAG
CGTTATGGCATTATGCAAAATTTTTTTGCATGGAATAAACACTCAAGATCAACGTTTAGT
GAATGTTATGGTGAAAGATTTAGTTGAATTACCAAATGCAGCACCAGTAACAACTAATGT
TCGTACACGATCACAAGCAGCACAAACACAAGTTGTAAATGTTCCAATAATGGTCAAAAT
TTTTAAATTACTTATTAATGAATTAGTTAATTTGAGAGAAATTAAAAGCGCACTTAATAA
CACCATTGATAGCGAAGAGGACGATGACACTGAAAATAGCTTAAATACTGGATTAGAAAT
TGGTGAAAAAAATTTCAATGCATTTATGCTTTATGATGATGGTAAGAATGTTTTCTTTTT
CATACATTATTTTTATATTGAAAAATTTATTTTTATATTACAATAGATGAAACTACCGAG
GATGATCAAATGCTGCAAGATTTGATGCAAGATCCTATTTTTCAAGAAGATACAGAAGTT
TCGCTCACTAAATTTCTAACAGATTTTAGTCGAAGTGAAAATTATCCAGTATTTGTGGAA
CAATTGACTCCTACAGAAAAGAAGCTCTTACAAAGTTTAAACATCACAACTTAA
>g11673.t4 Gene=g11673 Length=133
MALCKIFLHGINTQDQRLVNVMVKDLVELPNAAPVTTNVRTRSQAAQTQVVNVPIMVKIF
KLLINELVNLREIKSALNNTIDSEEDDDTENSLNTGLEIGEKNFNAFMLYDDGKNVFFFI
HYFYIEKFIFILQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g11673.t4 | Coils | Coil | Coil | 67 | 87 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
