General information for g11692.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11692 is located on chr_1: 17822381..17828147 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11692 | g11692.t4 | isoform | g11692.t4 | 17821627 | 17828147 |
| chr_1 | g11692 | g11692.t4 | exon | g11692.t4.exon1 | 17821627 | 17821986 |
| chr_1 | g11692 | g11692.t4 | TSS | g11692.t4 | 17821659 | 17821659 |
| chr_1 | g11692 | g11692.t4 | cds | g11692.t4.CDS1 | 17821797 | 17821986 |
| chr_1 | g11692 | g11692.t4 | exon | g11692.t4.exon2 | 17822041 | 17822513 |
| chr_1 | g11692 | g11692.t4 | cds | g11692.t4.CDS2 | 17822041 | 17822381 |
| chr_1 | g11692 | g11692.t4 | exon | g11692.t4.exon3 | 17828133 | 17828147 |
| chr_1 | g11692 | g11692.t4 | TTS | g11692.t4 | 17828311 | 17828311 |
Sequences
>g11692.t4 Gene=g11692 Length=848
ATGCATCAACAATTTTTAAATAATGCAACAAGCAGTTTATATTCACTCTCATCTGATGAA
TTACGTGAAATATTCGGGGATGATGACAAACTTGATCAAAGAATAGATGAAATAGTGCGT
AAAAAAATAGTGCTTTTGTTCGTTTTCTTTAAAAAAAAAATAATTATAAAATGTTTGTAA
TTTTGCAGTTGAAATCGCTAGAGAATGAAAAGGATGTGATAATTACTGAAAATCGCACAT
TAGCTGAAAGTAATTTAGAGAAGGAGCCACTACTCATTGAAGCAAGATCGCGTATAAATG
ATTTAACAGAAGAATTCAGAAATTTGAGTGAAAATGTACAACTGAAATTGACACAGATTA
AATCAAAGGCATCAACTACTGACCCTGAATCTGTTTTGGCTAGATTACAAGCTTTAGCAG
CTGAATCAGAGGAGCAAAGTGAAAAAATTGCCGATGAATTATTTGAAAATAATCTTTCAA
CTGAAGAGTTTCTTGAACAATTTAAAGCATCACGTACAATAATGCATCTAAGAAAATTGA
AAGCTGAAAAAATGCAAGAATTATTAAGGAGAGGAGCACATCGAAACACTCAACCTGGAA
TGAATAACAATTTTCCAACAACTGGATTTTATCAGAATACTCCATATCCTAACAGCATGC
CTGGTTTTCCTATGCCTATGATGCCTAGGCCTTCTTTCTAAAATAAATTGAACAGAAATG
AAATTAAATTGCTAACATGTTAAGTTAAAATATATGTGTTTTATGTATCCGCATTTTATC
CATACATTTGTTTTATAAATAAAATTAGAGCAGTTATAATTTACAAAATTGGATAAAAAA
AGAAAAAC
>g11692.t4 Gene=g11692 Length=176
MFVILQLKSLENEKDVIITENRTLAESNLEKEPLLIEARSRINDLTEEFRNLSENVQLKL
TQIKSKASTTDPESVLARLQALAAESEEQSEKIADELFENNLSTEEFLEQFKASRTIMHL
RKLKAEKMQELLRRGAHRNTQPGMNNNFPTTGFYQNTPYPNSMPGFPMPMMPRPSF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g11692.t4 | Coils | Coil | Coil | 7 | 27 | - |
| 6 | g11692.t4 | Coils | Coil | Coil | 35 | 62 | - |
| 5 | g11692.t4 | Coils | Coil | Coil | 76 | 96 | - |
| 2 | g11692.t4 | PANTHER | PTHR13678 | WILLIAMS-BEUREN SYNDROME CRITICAL REGION PROTEIN-RELATED | 6 | 150 | 1.2E-37 |
| 3 | g11692.t4 | PANTHER | PTHR13678:SF18 | LD45836P | 6 | 150 | 1.2E-37 |
| 1 | g11692.t4 | Pfam | PF07200 | Modifier of rudimentary (Mod(r)) protein | 6 | 124 | 9.5E-27 |
| 8 | g11692.t4 | ProSiteProfiles | PS51314 | VPS37 C-terminal domain profile. | 53 | 143 | 29.373 |
| 4 | g11692.t4 | SUPERFAMILY | SSF140111 | Endosomal sorting complex assembly domain | 72 | 126 | 5.56E-6 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
