General information for g11697.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein spartin.
Parent gene
- The parent gene g11697 is located on chr_1: 17831850..17840054 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11697 | g11697.t1 | TSS | g11697.t1 | 17829115 | 17829115 |
| chr_1 | g11697 | g11697.t1 | isoform | g11697.t1 | 17830071 | 17832235 |
| chr_1 | g11697 | g11697.t1 | exon | g11697.t1.exon1 | 17830071 | 17830187 |
| chr_1 | g11697 | g11697.t1 | cds | g11697.t1.CDS1 | 17830071 | 17830187 |
| chr_1 | g11697 | g11697.t1 | exon | g11697.t1.exon2 | 17830249 | 17831500 |
| chr_1 | g11697 | g11697.t1 | cds | g11697.t1.CDS2 | 17830249 | 17831500 |
| chr_1 | g11697 | g11697.t1 | exon | g11697.t1.exon3 | 17831871 | 17832235 |
| chr_1 | g11697 | g11697.t1 | cds | g11697.t1.CDS3 | 17831871 | 17832235 |
| chr_1 | g11697 | g11697.t1 | TTS | g11697.t1 | 17832347 | 17832347 |
Sequences
>g11697.t1 Gene=g11697 Length=1734
ATGTGCAGTGTTGAAGAATTTAATGAAATATTTTGTAAATTTCAAAAAATTTACGATGAT
TGTAATAAATTATTGACTCGTGGAATAAATGAGGAAGAAACATCAAATGAAGAATCGGCA
CTCAGAACATACAAAGAAGCAATTGAGTTAATTGACAAAGCTATGTTAATCCCAATTTCA
TTTCCATCAATGGAAGAGCAAGATGAAAACAAAGATATTGATAAGAAAATCAAAGATCTG
AAAAGAATAATTTATAATTTTAAGATGCAAAGGTCTGAAATACTTCTTAGAATTGGAACT
ATATTTAGGAAAAAAGAGCATGAAGAGGCTGAAAATTTAATGAAAAAACAAAAAATATCT
TCGGATAGTTGTAGTGAAGAAGAAAAACCAAAAATGCGGGCTCGTACATATATGGAGCTA
GAAAATGTATTGACTAATTTGGGAAAAGTTTCAGATGGTGATGACGGAAAAAATATTCTT
GAAATTCTTTTTTGCTGTAGCGGCGTTAAACTTTATTATATAGAGCAAAATGCTGATGTT
ATAAGCTCTTTAGAAGAGTTTGTATTGAGAATTATCAAATTAGGATCAGATTTTGAAAAT
AACTTAGAAGAGACTCTTTTTCTTCAACTTATTAAATCTTCAGATACCTCAATTGATATT
GGTGAAGAAATAACTGAAGATCAGTGTGCTGGTTCATCCGATTCTATAAATGTAAATGAA
AAAGAACAAAAAGCAGATCCGAGTTTTATTTATCCACTTATTCCTGGAGTAAGTCCACTA
TTTCGAACGAAATTCAACGCTTTTGTTCTCCCTGATCTACAAACTAATGATGGAAGTGCT
ATTGGTCTTCAGATTTGTAATCCAGAAACTGATGAGCTTGTACTCGATATATTGGTAACA
ATATTGAAAGGTGTAGTAAAAGAAAATGGTGAAATTGAGTTTGCAGATTTTACAAAGATT
AAAGATGAAAGTCAAAGAGTAAAGAGATCAACTGGAGAAAAATTTTCAGAGAACCTTGTT
TCTGGAGCTCATTGGATATCACAAGGACTAGTTTGCAGTGCGCAAAAAACAGGAGAATTT
ATAGATTACTCAACACCCTATATACTATCAAGAGTGCAACAAGCTGAAGATAGTGCACCT
CCCGTTTCTACTAAACTAAATACATCAGTTACCGTAGCGAGATCATTAAGCGGATATGCA
GCACAAGGAACATCGTTTCTAGCTGAAAAAGTTGGAGTTACCATGTCAAACTTTGGTAAA
TTTTTAGCACCTCATGTGCAACAACAAGGTGCAAAAATTTTGACATACACAACTGGAATG
GAGAGCGGAAAAGCTGTCGTCACAATGGAGGAAACTTTAAAAATTGCCAGTGGAGCTGCA
GAAGCTATATCAACTATATATAGTGGTTTAGAAACAAGTGCAAGCATTTTGGGAAGAAAT
TTAGCAGAAAATTCAGTGAAATTTGTTAGGTATAAATATGGAGAATCTTATGGAGAAATA
TCCGAAAAAGGTTTTGATACAGTTGGAAATTTGATAGCAGTAAATAGAAGTTTTAATATA
CTAACACCAAAAGGATTAGTCAAAAGTACAGCAAAGAGTGCTGGAAAGGGCATTCTTAAT
GCAGAAGAATTTAAACCAAAAGCTTACATAAATAAAGATTATTTTACAGGCAATACAAGA
CTCATTCCGAATCTGGATAATTTTGCAAAGGAAATAACAAAACCTAAAATTTAA
>g11697.t1 Gene=g11697 Length=577
MCSVEEFNEIFCKFQKIYDDCNKLLTRGINEEETSNEESALRTYKEAIELIDKAMLIPIS
FPSMEEQDENKDIDKKIKDLKRIIYNFKMQRSEILLRIGTIFRKKEHEEAENLMKKQKIS
SDSCSEEEKPKMRARTYMELENVLTNLGKVSDGDDGKNILEILFCCSGVKLYYIEQNADV
ISSLEEFVLRIIKLGSDFENNLEETLFLQLIKSSDTSIDIGEEITEDQCAGSSDSINVNE
KEQKADPSFIYPLIPGVSPLFRTKFNAFVLPDLQTNDGSAIGLQICNPETDELVLDILVT
ILKGVVKENGEIEFADFTKIKDESQRVKRSTGEKFSENLVSGAHWISQGLVCSAQKTGEF
IDYSTPYILSRVQQAEDSAPPVSTKLNTSVTVARSLSGYAAQGTSFLAEKVGVTMSNFGK
FLAPHVQQQGAKILTYTTGMESGKAVVTMEETLKIASGAAEAISTIYSGLETSASILGRN
LAENSVKFVRYKYGESYGEISEKGFDTVGNLIAVNRSFNILTPKGLVKSTAKSAGKGILN
AEEFKPKAYINKDYFTGNTRLIPNLDNFAKEITKPKI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g11697.t1 | Coils | Coil | Coil | 63 | 83 | - |
| 2 | g11697.t1 | PANTHER | PTHR21068 | SPARTIN | 16 | 543 | 1.4E-53 |
| 3 | g11697.t1 | PANTHER | PTHR21068:SF20 | SPARTIN | 16 | 543 | 1.4E-53 |
| 1 | g11697.t1 | Pfam | PF06911 | Senescence-associated protein | 339 | 514 | 8.0E-29 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K19366 (spartin)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
