General information for g11706.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Cyclic AMP response element-binding protein A.
Parent gene
- The parent gene g11706 is located on chr_1: 17964530..17965071 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11706 | g11706.t1 | TTS | g11706.t1 | 17948225 | 17948225 |
| chr_1 | g11706 | g11706.t1 | isoform | g11706.t1 | 17948499 | 17964592 |
| chr_1 | g11706 | g11706.t1 | exon | g11706.t1.exon1 | 17948499 | 17948759 |
| chr_1 | g11706 | g11706.t1 | cds | g11706.t1.CDS1 | 17948499 | 17948759 |
| chr_1 | g11706 | g11706.t1 | exon | g11706.t1.exon2 | 17948819 | 17948959 |
| chr_1 | g11706 | g11706.t1 | cds | g11706.t1.CDS2 | 17948819 | 17948959 |
| chr_1 | g11706 | g11706.t1 | exon | g11706.t1.exon3 | 17949023 | 17949237 |
| chr_1 | g11706 | g11706.t1 | cds | g11706.t1.CDS3 | 17949023 | 17949237 |
| chr_1 | g11706 | g11706.t1 | exon | g11706.t1.exon4 | 17949308 | 17949395 |
| chr_1 | g11706 | g11706.t1 | cds | g11706.t1.CDS4 | 17949308 | 17949395 |
| chr_1 | g11706 | g11706.t1 | exon | g11706.t1.exon5 | 17949450 | 17949838 |
| chr_1 | g11706 | g11706.t1 | cds | g11706.t1.CDS5 | 17949450 | 17949838 |
| chr_1 | g11706 | g11706.t1 | exon | g11706.t1.exon6 | 17950992 | 17951217 |
| chr_1 | g11706 | g11706.t1 | cds | g11706.t1.CDS6 | 17950992 | 17951217 |
| chr_1 | g11706 | g11706.t1 | exon | g11706.t1.exon7 | 17964530 | 17964592 |
| chr_1 | g11706 | g11706.t1 | cds | g11706.t1.CDS7 | 17964530 | 17964592 |
| chr_1 | g11706 | g11706.t1 | TSS | g11706.t1 | 17965071 | 17965071 |
Sequences
>g11706.t1 Gene=g11706 Length=1383
ATGGACGTCTACGCTGACAATGAGGTCAACGATCTTAAAGAACTATGGGAGACTGATTTA
GAGATGAACGAGTCTCTAAAATTAACGTCATCGGATATTAGTGATTGGTTCATGGATTGC
GATAATGAAGCCAATAATCAAAAAATACCGCATGTTATACTGAATGATAAATTGATGACT
GAAGCTCTTTTTGGCACTGTTGTACCTATAAAAGCTGAACATAGTTACAGCCTCACATCT
GACGGAGATTCAATTCCAAATTCACCTTCTGATGTTTCAAAACTTGAAGATATTGATGAG
AACAGTTGCCCTATGAATTTAATCAATTACAATCAAAGCGATAACAACAACAATTCTACA
GGCATAACAATAAGCAGTCAAAAACAGAAAAAATTTCTGCAGTTACTGAGCAACACAAGT
GCTTTATATGGTACGAATGCAATAAAATCCACTAACACATCTGCCACCTCATCTTTCAAT
CAGCCAAAGAGTTATAGTGGCTCAAATTCTTCATCGTCATGTGCAAGTAGCTTAGCAGAT
CTCGATGATATTACAATTGTAAAAGAGGAGCCATTATCTCCACATTCCAGTTGCCCGCCA
TCGCCTAATTGTAATAACTATGGCAACATATTGCCCAGTATCTCATCCATAAATCCTGAC
TTGATATATGATCGCAAGCCACTGCTAAGGAGTCAAGATCAGAATTTTCTTACCTCTCAA
ACCTGCACTACATCACGAATTAAAACGGAACCATCACAAGTTTCTAATTTTGGTTTACCT
CCAACACCTCCTTCATCGTCAATAGGTGACGAGACAAAAGGAAATTCAAGTCCTGAACAT
AATAATTGTCCTGCTTCATCAGCAGTCACCTCCACTTCAAGCAGCTCGAAAAAATCACAA
AATGCATCTCATGCAACACGTGGATATTCAAGTTCCACTCGCCAACCTATACACACGCCA
TTAATCAGCAGCCAACCGAAGGGTTCCACAGGTGAGCTCATTCTAACAGATGAAGAAAAA
CGCACATTGTTGGCTGAAGGTTATCCTATTCCGCAAAAACTTCCACTTACAAAGGCTGAG
GAAAAGTCTTTGAAAAAGATTCGAAGGAAGATTAAAAATAAGATCTCAGCACAAGAATCG
CGTCGTAAAAAGAAAGAATATATGGATCAGTTAGAGCGACGTGTTGAGAAACTTGTCACA
GAGAATAACAACTTTAGACAAAAAGTAAAAGTTTTATCAGATGAAAATAGCAACCTCCTT
AAAGAACTGCAACAGCTTTTGTTTTCGAGCTTCCCAAAAAATCAGTCACTTGTTATCAGC
CGAACTGCTAAACGATTATTGCGAGCTGAAAAAGACGAAATGATTGAATCAAATGTTGAA
TAG
>g11706.t1 Gene=g11706 Length=460
MDVYADNEVNDLKELWETDLEMNESLKLTSSDISDWFMDCDNEANNQKIPHVILNDKLMT
EALFGTVVPIKAEHSYSLTSDGDSIPNSPSDVSKLEDIDENSCPMNLINYNQSDNNNNST
GITISSQKQKKFLQLLSNTSALYGTNAIKSTNTSATSSFNQPKSYSGSNSSSSCASSLAD
LDDITIVKEEPLSPHSSCPPSPNCNNYGNILPSISSINPDLIYDRKPLLRSQDQNFLTSQ
TCTTSRIKTEPSQVSNFGLPPTPPSSSIGDETKGNSSPEHNNCPASSAVTSTSSSSKKSQ
NASHATRGYSSSTRQPIHTPLISSQPKGSTGELILTDEEKRTLLAEGYPIPQKLPLTKAE
EKSLKKIRRKIKNKISAQESRRKKKEYMDQLERRVEKLVTENNNFRQKVKVLSDENSNLL
KELQQLLFSSFPKNQSLVISRTAKRLLRAEKDEMIESNVE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11706.t1 | Coils | Coil | Coil | 381 | 422 | - |
| 5 | g11706.t1 | Coils | Coil | Coil | 444 | 460 | - |
| 4 | g11706.t1 | Gene3D | G3DSA:1.20.5.170 | - | 365 | 428 | 2.2E-12 |
| 9 | g11706.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 331 | - |
| 2 | g11706.t1 | PANTHER | PTHR46004 | CYCLIC AMP RESPONSE ELEMENT-BINDING PROTEIN A | 9 | 426 | 5.9E-80 |
| 1 | g11706.t1 | Pfam | PF00170 | bZIP transcription factor | 361 | 423 | 4.0E-16 |
| 7 | g11706.t1 | ProSitePatterns | PS00036 | Basic-leucine zipper (bZIP) domain signature. | 368 | 383 | - |
| 10 | g11706.t1 | ProSiteProfiles | PS50217 | Basic-leucine zipper (bZIP) domain profile. | 363 | 426 | 12.346 |
| 8 | g11706.t1 | SMART | SM00338 | brlzneu | 361 | 425 | 1.0E-15 |
| 3 | g11706.t1 | SUPERFAMILY | SSF57959 | Leucine zipper domain | 364 | 422 | 3.49E-12 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | BP |
| GO:0003700 | DNA-binding transcription factor activity | MF |
KEGG
Orthology
- This transcript has been annotated with K09048 (cyclic AMP-responsive element-binding protein 3)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
