General information for g11711.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11711 is located on chr_1: 17988715..17998172 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11711 | g11711.t5 | isoform | g11711.t5 | 17980427 | 17984753 |
| chr_1 | g11711 | g11711.t5 | exon | g11711.t5.exon1 | 17980427 | 17980659 |
| chr_1 | g11711 | g11711.t5 | TSS | g11711.t5 | 17980453 | 17980453 |
| chr_1 | g11711 | g11711.t5 | exon | g11711.t5.exon2 | 17983625 | 17983710 |
| chr_1 | g11711 | g11711.t5 | exon | g11711.t5.exon3 | 17983796 | 17983897 |
| chr_1 | g11711 | g11711.t5 | cds | g11711.t5.CDS1 | 17983858 | 17983897 |
| chr_1 | g11711 | g11711.t5 | exon | g11711.t5.exon4 | 17983977 | 17984753 |
| chr_1 | g11711 | g11711.t5 | cds | g11711.t5.CDS2 | 17983977 | 17984752 |
| chr_1 | g11711 | g11711.t5 | TTS | g11711.t5 | 17984748 | 17984748 |
Sequences
>g11711.t5 Gene=g11711 Length=1198
AGAAGAAGTTGATTCGACTCATCGAACAGTCGTATGGGAACGCTGGGTGAATTCGGAAAT
AAATTCGCGATTACGGGGAAAAAATTTGATTTATAATTGTGAGAAAGAGGAAGAATTCTC
AGAATAATAGAAATTAAAATGTACATAGTGAAAAGAAATTAGTTTACTATTTGTACTATT
CGTAGTTATAGATGTTTACGATTTTGTGTGTTATCAAATGAACAATTTTAAAGCTCCCAT
AATACAATAAAATCACAACAAAAGGTTAAAAAGCGAACAAAAAAAGACGAGATAATCATT
CAATTATTCCTCTTGTTTGGCGCAATGAACAGCATTTTGCGCACAATCTTAAGGAATTTA
AAAACGCCTACTGATGCATAGATGAAGACACAAGGTAGTCTTGAAGTACCTAAGCAGGTT
GCATCATTCGATGAAATTAAATTAGAGTCACAACGAGCAACTCAATACTTACTTAATAAT
CAATCATCAACCGATTCGCAATCTGCATTACTCACCGTTCCCAGTAATCAAAGATCACGA
AGCTTTGATTCAGCTGGTATTGAATCACCAGATGCAAATGCATCTTTTCTTGATATTCCA
AGACAGCGCTTTCGACGAAAGTCTAGCGCAAAAGCGTCATTATGTATACATTGTCAATAT
GTTGAGGAGCAAAGAAAACGTGGAAGTACTGCAGGTTTTTATTTCGATGCTCAAGAATTT
AAGTCTCTTACATATTCAAATTCATCCTCATCATCATCGTCTGAAAGTGAAAGCGAAAAT
AGCAATGAAGTTAAATGCAGCGACAATGAGAATTTAGATGTAGAACCAGAAGATGAGATA
GATATAGATCACTACTTTCAAACTCCTAATACTCTTTTACTACCTTCACCATGTAGCATT
ACGTTTACACTTTCACCAACGAATTGTGATTACCCAGCCTTTCCCCTATCATTGGGCACC
GTTCAGCCCAATAGTTCACCAGTGTTGCCTTCAACACCTCCCGTATTTCCACCATCACCA
ACAATTGAATTTTCTCACGATCTCGATGAAATTGAAATTCCCGGTCCACGACAACGTCGA
CGCTCAATATCGAGACAAGAAGCCATTTTTGTAGAGCCAACAGGTTCATCACTTGAAAAC
GTGTCAAATACACCAGAAACAGAAGAGCAGCAAACGAATGAAATAGAAAGAACAAAAA
>g11711.t5 Gene=g11711 Length=272
MKTQGSLEVPKQVASFDEIKLESQRATQYLLNNQSSTDSQSALLTVPSNQRSRSFDSAGI
ESPDANASFLDIPRQRFRRKSSAKASLCIHCQYVEEQRKRGSTAGFYFDAQEFKSLTYSN
SSSSSSSESESENSNEVKCSDNENLDVEPEDEIDIDHYFQTPNTLLLPSPCSITFTLSPT
NCDYPAFPLSLGTVQPNSSPVLPSTPPVFPPSPTIEFSHDLDEIEIPGPRQRRRSISRQE
AIFVEPTGSSLENVSNTPETEEQQTNEIERTK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g11711.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 60 | - |
| 3 | g11711.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 133 | - |
| 4 | g11711.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 143 | - |
| 2 | g11711.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 272 | - |
| 1 | g11711.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 262 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
