General information for g11713.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative CAAX prenyl protease 1-like protein.
Parent gene
- The parent gene g11713 is located on chr_1: 18019916..18022003 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11713 | g11713.t10 | TTS | g11713.t10 | 18019073 | 18019073 |
| chr_1 | g11713 | g11713.t10 | isoform | g11713.t10 | 18019252 | 18021807 |
| chr_1 | g11713 | g11713.t10 | exon | g11713.t10.exon1 | 18019252 | 18019559 |
| chr_1 | g11713 | g11713.t10 | cds | g11713.t10.CDS1 | 18019254 | 18019559 |
| chr_1 | g11713 | g11713.t10 | exon | g11713.t10.exon2 | 18019627 | 18019916 |
| chr_1 | g11713 | g11713.t10 | cds | g11713.t10.CDS2 | 18019627 | 18019731 |
| chr_1 | g11713 | g11713.t10 | exon | g11713.t10.exon3 | 18021096 | 18021807 |
| chr_1 | g11713 | g11713.t10 | TSS | g11713.t10 | NA | NA |
Sequences
>g11713.t10 Gene=g11713 Length=1310
GGTAAAAGATTTAATTTTGGGCCACTTTTGTGAGGTTTCAACAGAAAATGTCTGAAATCT
CTTTAAATACATAAATTAACACAATAATTAAGATTCGTACATAAAGATAAAGCTTTTCCT
TAATATTTTAAGATATATTTGAGAGTTAGAAGTCTTTAATTATTGAGTTATTGACAATAA
CGAAACCCAATTTAATTTTGGGCCAAAAAATCTATTTTTGGGCCACTTTTCAGATTTATA
AAATAATTCATTTCTACACATACTTTTAATGATTTAACACTTAATAAACCTTTTTCTTTG
CATTATATATTGTTTTTAACACTTAAATAAGCAGCAATTGTTTTATTTAAGGTTTTATCA
ATTTCGAATAATTTCCATATTTACAAAATTTTCATACAAAAATTTAGTGGCCCAAAATTA
AATCGGAATTTAAAATCGTATTTGTGGCTTTAATAAATATTTCTAGCTTGATGATTATTC
ATTAAAAAGTCTGTGAAACGGTTTAGTGCTTGTGAAGTATCAAATATGAGTGATAAAGTG
ACTGTTTTCGTGAATAATTAACAAAATATTGAAAACAAAAAAGTGACGGAAAATCAACAA
AAATCTTGATTATTCAAGTATTTAACGTTTTCATTTAATTAGCGAAAACTATTGAATGAT
GCTGAAATTAAACATTTACAGTGTAATCAGTGTTAAATAACGAATCAAATAAGATTATGG
GGAGTGAAGAGAATCGTACTTTTCGATACACTTTTGCTTAATAAAGGACTAGAAGATGAT
AGCACACTAGCTGAAGATGAAAAAGGCAAAGGATGCACCGATGAAGAAATTTTAGCTGTA
CTAGCTCATGAATTAGGACATTGGAAACTCGGGCACATGACAAAAAACATTATTATAATG
CAGATTCAACTCTTTCTTGTTTTCATCATGTTTTCATACCTTTTCAAATTCGGTGCATTA
TATGAAGCTGTAGGATTTACTAATGCAAAGCAACCAATTATTGTCGGATTCTTGGTAGTC
ATTATGTATGTACTTGCACCATTTAATACAATTGTCAGTTTTGGAATGACACTATTGTCT
AGAAAGTTTGAATATGAAGCAGATGCATTTGCTAATAATCTTGGATTTGGATCTGATTTG
TGTAAGTCATTAATTAAATTGCATATAGATAATTTGGGCTTTCCTTACTACGATTATTTG
TATAGCAGTTGGAATCATTCCGTAAGTATAAACAATATATTTTTGAATTTTAAATTTATG
TTAATGATTTTAAAATTTTTATTAGCATCCAACTCTTCTACAACGAATGA
>g11713.t10 Gene=g11713 Length=137
MQIQLFLVFIMFSYLFKFGALYEAVGFTNAKQPIIVGFLVVIMYVLAPFNTIVSFGMTLL
SRKFEYEADAFANNLGFGSDLCKSLIKLHIDNLGFPYYDYLYSSWNHSVSINNIFLNFKF
MLMILKFLLASNSSTTN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g11713.t10 | PANTHER | PTHR10120:SF24 | CAAX PRENYL PROTEASE 1 HOMOLOG | 1 | 108 | 2.5E-24 |
| 3 | g11713.t10 | PANTHER | PTHR10120 | CAAX PRENYL PROTEASE 1 | 1 | 108 | 2.5E-24 |
| 1 | g11713.t10 | Pfam | PF01435 | Peptidase family M48 | 10 | 100 | 8.1E-7 |
| 7 | g11713.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 4 | - |
| 11 | g11713.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 5 | 22 | - |
| 9 | g11713.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 23 | 33 | - |
| 10 | g11713.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 34 | 53 | - |
| 8 | g11713.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 54 | 137 | - |
| 6 | g11713.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 5 | 27 | - |
| 5 | g11713.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 34 | 56 | - |
| 4 | g11713.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 108 | 130 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008233 | peptidase activity | MF |
| GO:0006508 | proteolysis | BP |
| GO:0004222 | metalloendopeptidase activity | MF |
| GO:0071586 | CAAX-box protein processing | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
