Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Phosphatidylinositol 3-kinase catalytic subunit type 3.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11722 g11722.t5 isoform g11722.t5 18075100 18076396
chr_1 g11722 g11722.t5 exon g11722.t5.exon1 18075100 18075512
chr_1 g11722 g11722.t5 cds g11722.t5.CDS1 18075100 18075512
chr_1 g11722 g11722.t5 exon g11722.t5.exon2 18075572 18076124
chr_1 g11722 g11722.t5 cds g11722.t5.CDS2 18075572 18075839
chr_1 g11722 g11722.t5 exon g11722.t5.exon3 18076395 18076396
chr_1 g11722 g11722.t5 TSS g11722.t5 18077359 18077359
chr_1 g11722 g11722.t5 TTS g11722.t5 NA NA

Sequences

>g11722.t5 Gene=g11722 Length=968
ATGAAAACCTAGTTGAAAAAAAACATCATCGATTGGCACGTTCAGCTCGTTCAGGTTTAT
CTGATCGCGATGCAAAGCCAACCGCTCAAATTAGAGATCAACTACACTCACTTGTGCATA
GATCACCAACATTTCAATTAAACAGTGAAGAACAGGATTTGATATGGAAATATAGATTTT
ATTTAAGCACTCAAAAGAAGGCGCTTACAAAATTTCTTAAATGTATTAATTGGCAAACAT
CTGCAGAAGTAAGACAAGCTCTTAATCTTCTGGACTTATGGGCACCAATGGATGTTGAAG
ATGCTCTTGAATTATTGAGTCCGAATTTTCAACATCCAGCTGTTAGGCGATATGCGATAA
CACGTCTAAAGCAGTCACAGGATGATGATTTACTTCTCTATTTACTTCAGCTTGTACAAG
CATTAAAATATGAAAATTTTGATGATATTTTTGAATGGCGTCGACGTGTTATGAATGAAA
AAGACATTTTAAAATCGATTGATGATAACAATTCCACTACTAACGATCAAAGTTCAATTT
CTGATTCCATAATGGCTCAATCTATGACATCTCAACAATTTTTAAATGAATCAGAAGAAA
TAATTGTACCACCTTTAAATCAACAATCTATCATGTCAAGTTCAATATTTTATGATCAAC
AAAATGATAATATAAGTGATCAACCGAGAATTGATGATTCTAATAATGATGTAACATCAG
ATATTTCAAATACTTTGATGAATTCAAAAAGTTCATATATTTGTGATTTAGCAACATTTT
TAATTCAAAGAGCATGTAAAAATCCAACACTCGCTAATTTTTTCTATTGGTATTTGTTGA
TAGAATGTGAAGATCATGAAACTGTTAGAAAAAAAGACGAAAGAGTGCGAGAGATGTATG
AAAATGTGCAAAAAATTTTCCTTAAAACTCTGGAAATGGGTAATACAGATTTGAAAATCA
TTCATTCT

>g11722.t5 Gene=g11722 Length=227
MDVEDALELLSPNFQHPAVRRYAITRLKQSQDDDLLLYLLQLVQALKYENFDDIFEWRRR
VMNEKDILKSIDDNNSTTNDQSSISDSIMAQSMTSQQFLNESEEIIVPPLNQQSIMSSSI
FYDQQNDNISDQPRIDDSNNDVTSDISNTLMNSKSSYICDLATFLIQRACKNPTLANFFY
WYLLIECEDHETVRKKDERVREMYENVQKIFLKTLEMGNTDLKIIHS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g11722.t5 Gene3D G3DSA:1.25.40.70 - 1 118 0.000
6 g11722.t5 Gene3D G3DSA:1.25.40.70 - 140 219 0.000
2 g11722.t5 PANTHER PTHR10048 PHOSPHATIDYLINOSITOL KINASE 1 209 0.000
3 g11722.t5 PANTHER PTHR10048:SF7 PHOSPHATIDYLINOSITOL 3-KINASE CATALYTIC SUBUNIT TYPE 3 1 209 0.000
1 g11722.t5 Pfam PF00613 Phosphoinositide 3-kinase family, accessory domain (PIK domain) 2 206 0.000
8 g11722.t5 ProSiteProfiles PS51545 PIK helical domain profile. 1 207 21.124
5 g11722.t5 SMART SM00145 pi3k_hr2_4 1 224 0.000
4 g11722.t5 SUPERFAMILY SSF48371 ARM repeat 1 206 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0048015 phosphatidylinositol-mediated signaling BP
GO:0046854 phosphatidylinositol phosphate biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values