General information for g1173.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Guanine nucleotide-binding protein-like 3-like protein.
Parent gene
- The parent gene g1173 is located on chr_3: 8485744..8487626 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1173 | g1173.t3 | isoform | g1173.t3 | 8485688 | 8486638 |
| chr_3 | g1173 | g1173.t3 | exon | g1173.t3.exon1 | 8485688 | 8486638 |
| chr_3 | g1173 | g1173.t3 | cds | g1173.t3.CDS1 | 8485744 | 8486616 |
| chr_3 | g1173 | g1173.t3 | TSS | g1173.t3 | NA | NA |
| chr_3 | g1173 | g1173.t3 | TTS | g1173.t3 | NA | NA |
Sequences
>g1173.t3 Gene=g1173 Length=951
TCAACCAGGAATAACTAAAGCAATGCAAGAAGTTGAAATTGATTCAAACATTAAACTCAT
TGATAGTCCAGGAATAATATTTCAAAGACCAAAGAATGAATCTCCTGATGAGTTTTTTGC
ACTCAAAAATGCACAACATGTAAACACAGTGCAAGATCCTTTTCCACTTGCTTGTGATAT
TCTTAAACGTGCTACAGTCATGTATTTTTGTAAATTATACGACATCACTGAATATAAAAG
TCCAGAAGAATTTCTTGCTAAAAAAGCAGTAAAAATGGGAAAACTTATTCGAGGTGGAGT
GCCAGATGTGAGAGCAGCTGCAAGGAGTTTAATTCAAGATTGGAATACTGGTAAAATTAA
ATACTGTACACATCCACCAGTTGACAATTCTATGGATATTCATTTAAGTGCTGCAATTGT
TGATAATTCATCATCCGATAATAAAGAGTTTTGTGTTGATAATTTAGATGAATTTATGAA
TCAATTAGATGAACACTATAATTTAAATGATGAAGTTGTTATGGATATTGAAACAAAAGG
ACCAGTATCATTGCGAACTAATAAGAAGCAAAAGAATGAATCATATGGTGAAGCAAATAT
CATTGAAGAAGATGATGATGAAGAAATGTCAGAAGAACCTGTCAATAAAAAGAAAAAACG
AAAAGGTGCAGATGAAGATGACGATTATAAAGTGAAAAAGATCAAAAGTGATCCTGTTTT
TAGGCTTGAAGGTAATCAATCGCTCAACAAACAAAATAAAGATGCTGCAAAAAAGCTAAA
AAAGAAGCGAGAGAAGAATGAAAAGAAAATTACAAATGTTGCTGATGTTTTAGAAAACTT
TTCATTAGAAACTGGCGACGATTATGATTTTGATGATGATTACAATATTGAATGAAATAA
TTTTTTATTAGATTAAGATATTTTGAATTAATAAAAACAATACGAATTAAT
>g1173.t3 Gene=g1173 Length=290
MQEVEIDSNIKLIDSPGIIFQRPKNESPDEFFALKNAQHVNTVQDPFPLACDILKRATVM
YFCKLYDITEYKSPEEFLAKKAVKMGKLIRGGVPDVRAAARSLIQDWNTGKIKYCTHPPV
DNSMDIHLSAAIVDNSSSDNKEFCVDNLDEFMNQLDEHYNLNDEVVMDIETKGPVSLRTN
KKQKNESYGEANIIEEDDDEEMSEEPVNKKKKRKGADEDDDYKVKKIKSDPVFRLEGNQS
LNKQNKDAAKKLKKKREKNEKKITNVADVLENFSLETGDDYDFDDDYNIE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g1173.t3 | Coils | Coil | Coil | 238 | 262 | - |
| 5 | g1173.t3 | Gene3D | G3DSA:1.10.1580.10 | - | 38 | 112 | 7.8E-10 |
| 3 | g1173.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 259 | - |
| 4 | g1173.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 232 | - |
| 1 | g1173.t3 | PANTHER | PTHR11089 | GTP-BINDING PROTEIN-RELATED | 1 | 262 | 1.4E-42 |
| 2 | g1173.t3 | PANTHER | PTHR11089:SF30 | GUANINE NUCLEOTIDE-BINDING PROTEIN-LIKE 3 HOMOLOG | 1 | 262 | 1.4E-42 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
