General information for g11730.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Alpha-aminoadipic semialdehyde synthase, mitochondrial.
Parent gene
- The parent gene g11730 is located on chr_1: 18106891..18109696 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11730 | g11730.t2 | TSS | g11730.t2 | 18103398 | 18103398 |
| chr_1 | g11730 | g11730.t2 | isoform | g11730.t2 | 18103425 | 18104902 |
| chr_1 | g11730 | g11730.t2 | exon | g11730.t2.exon1 | 18103425 | 18103490 |
| chr_1 | g11730 | g11730.t2 | exon | g11730.t2.exon2 | 18103556 | 18103599 |
| chr_1 | g11730 | g11730.t2 | exon | g11730.t2.exon3 | 18103664 | 18103774 |
| chr_1 | g11730 | g11730.t2 | exon | g11730.t2.exon4 | 18104068 | 18104308 |
| chr_1 | g11730 | g11730.t2 | cds | g11730.t2.CDS1 | 18104215 | 18104308 |
| chr_1 | g11730 | g11730.t2 | exon | g11730.t2.exon5 | 18104366 | 18104590 |
| chr_1 | g11730 | g11730.t2 | cds | g11730.t2.CDS2 | 18104366 | 18104590 |
| chr_1 | g11730 | g11730.t2 | exon | g11730.t2.exon6 | 18104652 | 18104822 |
| chr_1 | g11730 | g11730.t2 | cds | g11730.t2.CDS3 | 18104652 | 18104822 |
| chr_1 | g11730 | g11730.t2 | exon | g11730.t2.exon7 | 18104897 | 18104902 |
| chr_1 | g11730 | g11730.t2 | cds | g11730.t2.CDS4 | 18104897 | 18104901 |
| chr_1 | g11730 | g11730.t2 | TTS | g11730.t2 | NA | NA |
Sequences
>g11730.t2 Gene=g11730 Length=864
ATGTTGCGAATAAATAATCATCTAAAAATTGATAAAAAGATCAAAACTTTATTTCGTCAA
AAACATAATGGTACTGTTATAGCAATACGTCGAGAAGATCAGTCTGTATGGGAACGAAGA
GCTCCTTTTAATCCAGCAATGGTGAAAAGGCTAATAACAAAAGAAGGAGCAAAAGTTATA
GTACAGCCTTCTAATCGACGTGCCTATCCTATGCAGGTAAAGCTTATTTAAATGCTGGAG
CTGTGATTAATGAAGATATCAGCGAAGCATCTGTAATTTTTGGTGTAAAGCAAGTTCCTG
TAGATTCTTTGATTCCCGATAAAACTTATTGTTTCTTTTCACATACAATAAAAGCACAAG
AAACAAATATGCCTCTCCTTGATGCAGTAATTGAGAAAAATATTCGTCTTATAGATTATG
AGAAACTTATGGATCGTAATGGTTTGCGTTTAGTTGCATTTGGTAAATATGCTGGTGTTG
CAGGAATGGTTAATATATTGCATGGGCTTGGACTACGACTTTTGGCTTTAGGACATCATA
CGCCATTTATGCAAATTTCACCTGCACATAATTATCGAAACTCAATGATGGCACGTCAAG
CAGTTCGTGATTGCGGTTACGAAATTTCGCTTGGAATGATGCCTAAATCCATCGGACCAA
TCACATTTATTTTTACAGGAACTGGAAGTGTATCTCAGGGAGCTCAACAAATATTTCAAG
AGTTGCCTGTTGAGTACGTTCCGCCAGATATGTTAAGGAAAGTTGCTGAGCATGGCAGTC
AAAATAAATTGTATGGATGTGAAGTATCTAGAAGTGATCATTTAGAACGTCGAGAAGGAG
GTGGATTTGATCCTATTGAATATG
>g11730.t2 Gene=g11730 Length=165
MPLLDAVIEKNIRLIDYEKLMDRNGLRLVAFGKYAGVAGMVNILHGLGLRLLALGHHTPF
MQISPAHNYRNSMMARQAVRDCGYEISLGMMPKSIGPITFIFTGTGSVSQGAQQIFQELP
VEYVPPDMLRKVAEHGSQNKLYGCEVSRSDHLERREGGGFDPIEY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g11730.t2 | PANTHER | PTHR11133:SF21 | ALPHA-AMINOADIPIC SEMIALDEHYDE SYNTHASE, MITOCHONDRIAL | 1 | 165 | 0 |
| g11730.t2 | PANTHER | PTHR11133 | SACCHAROPINE DEHYDROGENASE | 1 | 165 | 0 |
| g11730.t2 | SUPERFAMILY | SSF52283 | Formate/glycerate dehydrogenase catalytic domain-like | 1 | 112 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed