General information for g11732.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Importin-13.
Parent gene
- The parent gene g11732 is located on chr_1: 18115562..18117378 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11732 | g11732.t1 | TSS | g11732.t1 | 18109971 | 18109971 |
| chr_1 | g11732 | g11732.t1 | isoform | g11732.t1 | 18110031 | 18113314 |
| chr_1 | g11732 | g11732.t1 | exon | g11732.t1.exon1 | 18110031 | 18110142 |
| chr_1 | g11732 | g11732.t1 | cds | g11732.t1.CDS1 | 18110031 | 18110142 |
| chr_1 | g11732 | g11732.t1 | exon | g11732.t1.exon2 | 18110234 | 18110439 |
| chr_1 | g11732 | g11732.t1 | cds | g11732.t1.CDS2 | 18110234 | 18110439 |
| chr_1 | g11732 | g11732.t1 | exon | g11732.t1.exon3 | 18110497 | 18112563 |
| chr_1 | g11732 | g11732.t1 | cds | g11732.t1.CDS3 | 18110497 | 18112563 |
| chr_1 | g11732 | g11732.t1 | exon | g11732.t1.exon4 | 18112633 | 18112768 |
| chr_1 | g11732 | g11732.t1 | cds | g11732.t1.CDS4 | 18112633 | 18112768 |
| chr_1 | g11732 | g11732.t1 | exon | g11732.t1.exon5 | 18112824 | 18113151 |
| chr_1 | g11732 | g11732.t1 | cds | g11732.t1.CDS5 | 18112824 | 18113151 |
| chr_1 | g11732 | g11732.t1 | exon | g11732.t1.exon6 | 18113230 | 18113314 |
| chr_1 | g11732 | g11732.t1 | cds | g11732.t1.CDS6 | 18113230 | 18113314 |
| chr_1 | g11732 | g11732.t1 | TTS | g11732.t1 | 18113421 | 18113421 |
Sequences
>g11732.t1 Gene=g11732 Length=2934
ATGGAAACTCTAGATAATTTGGAACAAGCAGTTAATCTTTTTTATAAGAGTCAATCTACC
GATCAAGCACAATTAAATGAATATCTCACAATACAGCAAAAGAGTCAATTGGCTTGGCAA
TGGTCATGGGAATTTCTTGATTTTTCGAGAACAATTGAAGTGCAATTTTTCGGAGCAACA
ACTTTGCATATGAAAATCCAAAAAAATTTCTTAGAAGTTCCCGAATCTATGAGACAAGAA
TTGAAAGAAAAGTTACTGCAAAAAATTATCGAATTTGGTAGTGGAACAAAATTAGTTCTT
AATAGATTATCTATGTGTTTGAGTGCTTTTATTGTTCATATGCTTAAAGAATGGCCATCG
GCAATAAATGATGTGATAGATATGTTTCTTAATCGGCAACTTCCAAATATAACTCAACAA
ACACAACAATGGATATTATTCGATGTTCTTTCAAGTATTCCTGAGGAAGCTTGCAATATA
ATAACCGTACAACGAGCTCAAGTGAAGCAGGAAGTTTATAAAAATTCAACAGTTGTTTTA
AAAACGTTGGAGCAATTTATCAATACTAAATGCGAAAAACATCAACTTGAGGATGAGGAT
ATAATTGCTCTTCAAAATGTAGCAAAATGCTGTCAAAATTGGTTCAAAAATGGACTCATA
GTTCTCGATGGTTGTCAAGAAATTACAACACAGCTATTGAAATTAGTATCGAAAATTTAT
TGGTCAATATTAGAAACAGATGGTTGTCTCTCACCTGATGAAAGTGAACTTACAGAGACA
TGTTTAAAAGCTCTATCATCTATGATGGCTCAACCAGACGCATATAAATATTCCAATTCA
GCTCTCACACTAATGCGAATGTTTTTGGAATCACTTAGTCCTATAGTAAAAAATGAATGG
AAAATTGACAACTTGAATGAAGACATTGCATTTTGCATTTATTCACTTTTTATAGCATCA
ATTGAATGTCATTCACGTACGATATTGGCAGGCATATATGCTGAATCTGTCGAGCATCAT
GAAATTTATGCTAGATTTGTCAATGAAATCTTACTCTGTACAGACAAACCAGGAAATTAT
CCGGTAGAAGAATCATGTTCAACACTGGCAATGGGTTTTTGGTTTCTTTTACAGGATGAA
ATTTTGTCTTATGATAATCCTCTTGAACGCCAAAAATGTTTGGAAGCAATTCAACCAGTG
TATGCACATTTAGTTAAAATTCTTGTACGAAAGTCTCAATTACCTGACGAAGATAACATT
GGCAAGTGGAATTCTGACGATTTGGAAACTTTTCGATGCTATAGACAAGACATAGCGGAC
ACACTTTTATGTTGCTTTGATGTTTTACATGTGCAAATATTAAAAATTTTATCTGAAATT
CTTGATCAAGGAATTGCAGCAATTCAGATTGATACAAAAAACTGGCCCATCTTAGAAGCA
GCTATACATGGATTCTGTGCAATCTCTCAGCAAATTGAGAGTGTTGAATATGAAGAAATT
GTAAAATTAATGCGTGTGTTGAATGAAATTCCATACGAATCAATTAATGAGAAATTATTA
GGAACTGCTTTAGAAACAATGGGTTCTTATAGTGAATGGGTTAATGATAATCCAAAATAT
TTAATGAGCGCAATTCAATTACTTGTTAAAGGTCTTGACTCATCTATGGCGAGTCAGGCA
ACTTTAGGTTTGAAAGATTTAACGAGTGATTGTCAACCTGATCAAATGATGCCTCTAGCT
GAACCTCTATTAGAAGCTTGCCAGAGGTCTCTTTTAAAAGGTCACATGGCAAATTCTGAA
TCAATTAGACTCATGTATAGTATTGGAAACATTATGAGTGTTGTTTCAAGCGAAAAAATT
CCAATATATCTGGATAATATTATTTCTCCTTGCTTCACTGAACTTCAAATGCATGCAGAG
CAAAAAAACACAAATGATAGTGCAAGAATAAGAGTAATGTTTTGTTTAAATATGATATCC
ACATTATTTTCATCACTCAATACAAACAAATGTAAAAATGAAAAAAAGAGAATTCAACCA
GTAATGAGTTCTGAACATCAACAACCACAACCAATATTAATGATTCTTCAAAAGACAATG
CCAATATTTAAACAAATTTGCGATTTATATATTAATGATGTACAAGTCATAGAAATATTA
TGTAAAGCTATTCAGCAAGCACTAAGTAATTTAATGGACGACATAAAACCCATTTTAAAT
GACATTTGCTCTTTAATTGTATCAATTTTTCAAATCAAATGTGTACCAGCAGTGAACGAC
ATTGGAGGTTTATGTATATTAATGTTTTATGGTGACGAACTTTACAAAGAATCTATGAAA
CAGCTTTTACTTCAAATTGTAGTTTACAATTTTAGAGTATTTGAGCAAACACCATTAAAC
AAGTTTTCTGATATATCAGATTTAGTAGAATCCTTCTATGCTCTCAATACTAAAATTGTG
AAAAAAATTCCTGGCGCTTACACCAGTGAAAATATGGATTTTATAAAGATGATGAATTAT
GCATTGAAAGGTGTAACTTTACCAGAGACAGGAGCTATTAAAAAATCGGCATCTTTTATA
GCAACATTTGTAAAAGAATCAAGAAATCATATTAACATGACAAATACTGTTTTGTTGAAA
GGAGAAGATATTATCAAAACTTCGCTAATGTGCATTGCAGGCGCTATACCTCGTGTTAAT
GTTGATGTATTTGGTGATATTTTCATTTCCTTAAATACAAAATATCCATCAGAATTCATT
ATTTGGATGAAAATACTTGAGACACCAAATTTTCCTACAACTTATATTAATCCTGAAGAA
AAAATTAATTTTATGAGATCAATCATAAGGGAAAAAGTTAATAAACGTCTCATACAAGAT
CAAATCAAAAGATTTGCTGCAAAATGTCGAGGAGTAATTGAAGACCATATGTAA
>g11732.t1 Gene=g11732 Length=977
METLDNLEQAVNLFYKSQSTDQAQLNEYLTIQQKSQLAWQWSWEFLDFSRTIEVQFFGAT
TLHMKIQKNFLEVPESMRQELKEKLLQKIIEFGSGTKLVLNRLSMCLSAFIVHMLKEWPS
AINDVIDMFLNRQLPNITQQTQQWILFDVLSSIPEEACNIITVQRAQVKQEVYKNSTVVL
KTLEQFINTKCEKHQLEDEDIIALQNVAKCCQNWFKNGLIVLDGCQEITTQLLKLVSKIY
WSILETDGCLSPDESELTETCLKALSSMMAQPDAYKYSNSALTLMRMFLESLSPIVKNEW
KIDNLNEDIAFCIYSLFIASIECHSRTILAGIYAESVEHHEIYARFVNEILLCTDKPGNY
PVEESCSTLAMGFWFLLQDEILSYDNPLERQKCLEAIQPVYAHLVKILVRKSQLPDEDNI
GKWNSDDLETFRCYRQDIADTLLCCFDVLHVQILKILSEILDQGIAAIQIDTKNWPILEA
AIHGFCAISQQIESVEYEEIVKLMRVLNEIPYESINEKLLGTALETMGSYSEWVNDNPKY
LMSAIQLLVKGLDSSMASQATLGLKDLTSDCQPDQMMPLAEPLLEACQRSLLKGHMANSE
SIRLMYSIGNIMSVVSSEKIPIYLDNIISPCFTELQMHAEQKNTNDSARIRVMFCLNMIS
TLFSSLNTNKCKNEKKRIQPVMSSEHQQPQPILMILQKTMPIFKQICDLYINDVQVIEIL
CKAIQQALSNLMDDIKPILNDICSLIVSIFQIKCVPAVNDIGGLCILMFYGDELYKESMK
QLLLQIVVYNFRVFEQTPLNKFSDISDLVESFYALNTKIVKKIPGAYTSENMDFIKMMNY
ALKGVTLPETGAIKKSASFIATFVKESRNHINMTNTVLLKGEDIIKTSLMCIAGAIPRVN
VDVFGDIFISLNTKYPSEFIIWMKILETPNFPTTYINPEEKINFMRSIIREKVNKRLIQD
QIKRFAAKCRGVIEDHM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11732.t1 | Gene3D | G3DSA:1.25.10.10 | - | 52 | 976 | 0 |
| 3 | g11732.t1 | PANTHER | PTHR12363:SF33 | IMPORTIN-13 | 2 | 972 | 0 |
| 4 | g11732.t1 | PANTHER | PTHR12363 | TRANSPORTIN 3 AND IMPORTIN 13 | 2 | 972 | 0 |
| 1 | g11732.t1 | Pfam | PF18773 | Importin 13 repeat | 414 | 451 | 0 |
| 2 | g11732.t1 | Pfam | PF18806 | Importin 13 repeat | 846 | 919 | 0 |
| 5 | g11732.t1 | SUPERFAMILY | SSF48371 | ARM repeat | 1 | 868 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K25202 (importin-13)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
