General information for g11732.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Importin-13.
Parent gene
- The parent gene g11732 is located on chr_1: 18115562..18117378 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11732 | g11732.t3 | TSS | g11732.t3 | 18109971 | 18109971 |
| chr_1 | g11732 | g11732.t3 | isoform | g11732.t3 | 18110031 | 18115562 |
| chr_1 | g11732 | g11732.t3 | exon | g11732.t3.exon1 | 18110031 | 18110142 |
| chr_1 | g11732 | g11732.t3 | cds | g11732.t3.CDS1 | 18110031 | 18110142 |
| chr_1 | g11732 | g11732.t3 | exon | g11732.t3.exon2 | 18110234 | 18110439 |
| chr_1 | g11732 | g11732.t3 | cds | g11732.t3.CDS2 | 18110234 | 18110439 |
| chr_1 | g11732 | g11732.t3 | exon | g11732.t3.exon3 | 18110497 | 18112563 |
| chr_1 | g11732 | g11732.t3 | cds | g11732.t3.CDS3 | 18110497 | 18112563 |
| chr_1 | g11732 | g11732.t3 | exon | g11732.t3.exon4 | 18112633 | 18112768 |
| chr_1 | g11732 | g11732.t3 | cds | g11732.t3.CDS4 | 18112633 | 18112768 |
| chr_1 | g11732 | g11732.t3 | exon | g11732.t3.exon5 | 18112824 | 18113151 |
| chr_1 | g11732 | g11732.t3 | cds | g11732.t3.CDS5 | 18112824 | 18113151 |
| chr_1 | g11732 | g11732.t3 | exon | g11732.t3.exon6 | 18113230 | 18113310 |
| chr_1 | g11732 | g11732.t3 | cds | g11732.t3.CDS6 | 18113230 | 18113310 |
| chr_1 | g11732 | g11732.t3 | exon | g11732.t3.exon7 | 18113443 | 18113450 |
| chr_1 | g11732 | g11732.t3 | cds | g11732.t3.CDS7 | 18113443 | 18113450 |
| chr_1 | g11732 | g11732.t3 | exon | g11732.t3.exon8 | 18113847 | 18113941 |
| chr_1 | g11732 | g11732.t3 | cds | g11732.t3.CDS8 | 18113847 | 18113941 |
| chr_1 | g11732 | g11732.t3 | exon | g11732.t3.exon9 | 18113995 | 18114302 |
| chr_1 | g11732 | g11732.t3 | cds | g11732.t3.CDS9 | 18113995 | 18114302 |
| chr_1 | g11732 | g11732.t3 | exon | g11732.t3.exon10 | 18114377 | 18115562 |
| chr_1 | g11732 | g11732.t3 | cds | g11732.t3.CDS10 | 18114377 | 18115562 |
| chr_1 | g11732 | g11732.t3 | TTS | g11732.t3 | 18115764 | 18115764 |
Sequences
>g11732.t3 Gene=g11732 Length=4527
ATGGAAACTCTAGATAATTTGGAACAAGCAGTTAATCTTTTTTATAAGAGTCAATCTACC
GATCAAGCACAATTAAATGAATATCTCACAATACAGCAAAAGAGTCAATTGGCTTGGCAA
TGGTCATGGGAATTTCTTGATTTTTCGAGAACAATTGAAGTGCAATTTTTCGGAGCAACA
ACTTTGCATATGAAAATCCAAAAAAATTTCTTAGAAGTTCCCGAATCTATGAGACAAGAA
TTGAAAGAAAAGTTACTGCAAAAAATTATCGAATTTGGTAGTGGAACAAAATTAGTTCTT
AATAGATTATCTATGTGTTTGAGTGCTTTTATTGTTCATATGCTTAAAGAATGGCCATCG
GCAATAAATGATGTGATAGATATGTTTCTTAATCGGCAACTTCCAAATATAACTCAACAA
ACACAACAATGGATATTATTCGATGTTCTTTCAAGTATTCCTGAGGAAGCTTGCAATATA
ATAACCGTACAACGAGCTCAAGTGAAGCAGGAAGTTTATAAAAATTCAACAGTTGTTTTA
AAAACGTTGGAGCAATTTATCAATACTAAATGCGAAAAACATCAACTTGAGGATGAGGAT
ATAATTGCTCTTCAAAATGTAGCAAAATGCTGTCAAAATTGGTTCAAAAATGGACTCATA
GTTCTCGATGGTTGTCAAGAAATTACAACACAGCTATTGAAATTAGTATCGAAAATTTAT
TGGTCAATATTAGAAACAGATGGTTGTCTCTCACCTGATGAAAGTGAACTTACAGAGACA
TGTTTAAAAGCTCTATCATCTATGATGGCTCAACCAGACGCATATAAATATTCCAATTCA
GCTCTCACACTAATGCGAATGTTTTTGGAATCACTTAGTCCTATAGTAAAAAATGAATGG
AAAATTGACAACTTGAATGAAGACATTGCATTTTGCATTTATTCACTTTTTATAGCATCA
ATTGAATGTCATTCACGTACGATATTGGCAGGCATATATGCTGAATCTGTCGAGCATCAT
GAAATTTATGCTAGATTTGTCAATGAAATCTTACTCTGTACAGACAAACCAGGAAATTAT
CCGGTAGAAGAATCATGTTCAACACTGGCAATGGGTTTTTGGTTTCTTTTACAGGATGAA
ATTTTGTCTTATGATAATCCTCTTGAACGCCAAAAATGTTTGGAAGCAATTCAACCAGTG
TATGCACATTTAGTTAAAATTCTTGTACGAAAGTCTCAATTACCTGACGAAGATAACATT
GGCAAGTGGAATTCTGACGATTTGGAAACTTTTCGATGCTATAGACAAGACATAGCGGAC
ACACTTTTATGTTGCTTTGATGTTTTACATGTGCAAATATTAAAAATTTTATCTGAAATT
CTTGATCAAGGAATTGCAGCAATTCAGATTGATACAAAAAACTGGCCCATCTTAGAAGCA
GCTATACATGGATTCTGTGCAATCTCTCAGCAAATTGAGAGTGTTGAATATGAAGAAATT
GTAAAATTAATGCGTGTGTTGAATGAAATTCCATACGAATCAATTAATGAGAAATTATTA
GGAACTGCTTTAGAAACAATGGGTTCTTATAGTGAATGGGTTAATGATAATCCAAAATAT
TTAATGAGCGCAATTCAATTACTTGTTAAAGGTCTTGACTCATCTATGGCGAGTCAGGCA
ACTTTAGGTTTGAAAGATTTAACGAGTGATTGTCAACCTGATCAAATGATGCCTCTAGCT
GAACCTCTATTAGAAGCTTGCCAGAGGTCTCTTTTAAAAGGTCACATGGCAAATTCTGAA
TCAATTAGACTCATGTATAGTATTGGAAACATTATGAGTGTTGTTTCAAGCGAAAAAATT
CCAATATATCTGGATAATATTATTTCTCCTTGCTTCACTGAACTTCAAATGCATGCAGAG
CAAAAAAACACAAATGATAGTGCAAGAATAAGAGTAATGTTTTGTTTAAATATGATATCC
ACATTATTTTCATCACTCAATACAAACAAATGTAAAAATGAAAAAAAGAGAATTCAACCA
GTAATGAGTTCTGAACATCAACAACCACAACCAATATTAATGATTCTTCAAAAGACAATG
CCAATATTTAAACAAATTTGCGATTTATATATTAATGATGTACAAGTCATAGAAATATTA
TGTAAAGCTATTCAGCAAGCACTAAGTAATTTAATGGACGACATAAAACCCATTTTAAAT
GACATTTGCTCTTTAATTGTATCAATTTTTCAAATCAAATGTGTACCAGCAGTGAACGAC
ATTGGAGGTTTATGTATATTAATGTTTTATGGTGACGAACTTTACAAAGAATCTATGAAA
CAGCTTTTACTTCAAATTGTAGTTTACAATTTTAGAGTATTTGAGCAAACACCATTAAAC
AAGTTTTCTGATATATCAGATTTAGTAGAATCCTTCTATGCTCTCAATACTAAAATTGTG
AAAAAAATTCCTGGCGCTTACACCAGTGAAAATATGGATTTTATAAAGATGATGAATTAT
GCATTGAAAGGTGTAACTTTACCAGAGACAGGAGCTATTAAAAAATCGGCATCTTTTATA
GCAACATTTGTAAAAGAATCAAGAAATCATATTAACATGACAAATACTGTTTTGTTGAAA
GGAGAAGATATTATCAAAACTTCGCTAATGTGCATTGCAGGCGCTATACCTCGTGTTAAT
GTTGATGTATTTGGTGATATTTTCATTTCCTTAAATACAAAATATCCATCAGAATTCATT
ATTTGGATGAAAATACTTGAGACACCAAATTTTCCTACAACTTATATTAATCCTGAAGAA
AAAATTAATTTTATGAGATCAATCATAAGGGAAAAAGTTAATAAACGTCTCATACAAGAT
CAAATCAAAAGATTTGCTGCAAAATGTCGAGGAGTAATTGAAGACCATATTAAAACAAAA
TATCTTTTTGCTGAAATTCCAAAAAATGAGGGTAAAAATAAAAGGAAATTATATAGTTCA
AATTCATCTTCATATAAAGATATTAATGTATTGGTAAATCCAGTGTTTCCGATTGCGGTT
ATTTTAGTCCTTCTCTCTAAAACATTTGAAGCCACAGCTGCCAATGGAATAAGAAGTATT
TTGAGTCTGTTTTTAAGAGATAGTTTAATGCTTAGCGAAAGATTTTCAATAATAGTTTTG
CACACTTTCAATTTTATTTCTCAATTTTTACCCATCATTTCTGCTATAATATCTGATTGT
TATTTGGGTACTGTAAAAACTTTATTAATATTTTTCGTACCTTACGCAATAGGATATTTT
CTACTTTTTGCATCAACATTTCCTTATCTGTTTACGGCTCATTTACTCGTTTATGCATCA
TTATTGTTGATTGGTGTTGGAAATGGTTTTCTTCGAGCTTGTATAACAACACTAGGTGCA
AATCAGTATATTTTACCACAACAAAGACTTGATCTCGATCGTTATTTTTCTGGATATTAC
TTTTTCTATTATGTGGGAATATTAATAGGAAAAATTTTGCCTCCATATATGAGAAAATCA
GTTCTTTTAACATCATATTGTATGGAAATTGGAGAATGCTATACAACTGTTTTTGGTTTT
TTAACAATCACATTTTTGATATCTTGGATTTTATTTCTGAGTGGATTAAAATTATATAAA
AAGGAATATCCAACACTAGACAATACTATGATAAAAACAATCGACTGCATTTTACATGCC
GTTATTAGAAAAATTTGTTTAAAATCAACTGAAAAAAATTTTCTTGACAATTCTATTGGA
AGACATTCTCAAGAATTTGTTGAGGATGTGAGGACATTTTTAAAAATTATAAAATTGTTC
CTTCCATTGCCAATTTTTTACGCGTTACTCAATCAACAGGACTCAACCTTTACTTTTCAA
GCTACTTTGACTGATACTAACATAATGGGAATCGAAATTCAACCAGATCAGTTTAAAAGC
ATTGGGCCAATCATTTTATTAATTCTTATTCCAATTTGGGAAAAAATTATTACTCCACTG
TTAACAAGATGTGGAATTTATTTAAGTTCTCTTGAGTGTATGTTCATTGGTTGTCTTTTT
GCAACACTGAGCTTTGTTTGTGCAGGTTTATTACAACATTTTATAATTGTTGAGAGTAGT
GTGAAGCAGTATTCAGTGTTATGGCAATTTCCCCAATTTTTATTTATAATGATTGCTGAA
CTTCTAATTTCTATTCATGGACTGAAATATGCTTATACCAATGCACCAAGTAGTATGAAA
TCATTATTAACTGCAATATTTTTCATGAATAATGCCTTTGGAAATTTATTGGTGATAATT
ATTACTCAAATTGGTTTGTTTAAAGAAAATCATGCTATGGATTTTCTTTTTTATGCATTC
TTTATGTTAATAGCAACAATATTGATTAAATTTTTAGCACATTCTCATGACAAAGACTTT
TCACAAGATATAAATGAAGAAAAAACTTTTGAAGCATTTATTTGTGTTAATGAAATTCAA
GCAAGTAATATGGAAGAAAACATCTAA
>g11732.t3 Gene=g11732 Length=1508
METLDNLEQAVNLFYKSQSTDQAQLNEYLTIQQKSQLAWQWSWEFLDFSRTIEVQFFGAT
TLHMKIQKNFLEVPESMRQELKEKLLQKIIEFGSGTKLVLNRLSMCLSAFIVHMLKEWPS
AINDVIDMFLNRQLPNITQQTQQWILFDVLSSIPEEACNIITVQRAQVKQEVYKNSTVVL
KTLEQFINTKCEKHQLEDEDIIALQNVAKCCQNWFKNGLIVLDGCQEITTQLLKLVSKIY
WSILETDGCLSPDESELTETCLKALSSMMAQPDAYKYSNSALTLMRMFLESLSPIVKNEW
KIDNLNEDIAFCIYSLFIASIECHSRTILAGIYAESVEHHEIYARFVNEILLCTDKPGNY
PVEESCSTLAMGFWFLLQDEILSYDNPLERQKCLEAIQPVYAHLVKILVRKSQLPDEDNI
GKWNSDDLETFRCYRQDIADTLLCCFDVLHVQILKILSEILDQGIAAIQIDTKNWPILEA
AIHGFCAISQQIESVEYEEIVKLMRVLNEIPYESINEKLLGTALETMGSYSEWVNDNPKY
LMSAIQLLVKGLDSSMASQATLGLKDLTSDCQPDQMMPLAEPLLEACQRSLLKGHMANSE
SIRLMYSIGNIMSVVSSEKIPIYLDNIISPCFTELQMHAEQKNTNDSARIRVMFCLNMIS
TLFSSLNTNKCKNEKKRIQPVMSSEHQQPQPILMILQKTMPIFKQICDLYINDVQVIEIL
CKAIQQALSNLMDDIKPILNDICSLIVSIFQIKCVPAVNDIGGLCILMFYGDELYKESMK
QLLLQIVVYNFRVFEQTPLNKFSDISDLVESFYALNTKIVKKIPGAYTSENMDFIKMMNY
ALKGVTLPETGAIKKSASFIATFVKESRNHINMTNTVLLKGEDIIKTSLMCIAGAIPRVN
VDVFGDIFISLNTKYPSEFIIWMKILETPNFPTTYINPEEKINFMRSIIREKVNKRLIQD
QIKRFAAKCRGVIEDHIKTKYLFAEIPKNEGKNKRKLYSSNSSSYKDINVLVNPVFPIAV
ILVLLSKTFEATAANGIRSILSLFLRDSLMLSERFSIIVLHTFNFISQFLPIISAIISDC
YLGTVKTLLIFFVPYAIGYFLLFASTFPYLFTAHLLVYASLLLIGVGNGFLRACITTLGA
NQYILPQQRLDLDRYFSGYYFFYYVGILIGKILPPYMRKSVLLTSYCMEIGECYTTVFGF
LTITFLISWILFLSGLKLYKKEYPTLDNTMIKTIDCILHAVIRKICLKSTEKNFLDNSIG
RHSQEFVEDVRTFLKIIKLFLPLPIFYALLNQQDSTFTFQATLTDTNIMGIEIQPDQFKS
IGPIILLILIPIWEKIITPLLTRCGIYLSSLECMFIGCLFATLSFVCAGLLQHFIIVESS
VKQYSVLWQFPQFLFIMIAELLISIHGLKYAYTNAPSSMKSLLTAIFFMNNAFGNLLVII
ITQIGLFKENHAMDFLFYAFFMLIATILIKFLAHSHDKDFSQDINEEKTFEAFICVNEIQ
ASNMEENI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 17 | g11732.t3 | Gene3D | G3DSA:1.25.10.10 | - | 52 | 976 | 1.1E-261 |
| 18 | g11732.t3 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 1012 | 1480 | 7.1E-91 |
| 4 | g11732.t3 | PANTHER | PTHR12363:SF33 | IMPORTIN-13 | 2 | 975 | 1.4E-150 |
| 5 | g11732.t3 | PANTHER | PTHR12363 | TRANSPORTIN 3 AND IMPORTIN 13 | 2 | 975 | 1.4E-150 |
| 1 | g11732.t3 | Pfam | PF18773 | Importin 13 repeat | 414 | 451 | 2.3E-14 |
| 2 | g11732.t3 | Pfam | PF18806 | Importin 13 repeat | 846 | 919 | 6.1E-20 |
| 3 | g11732.t3 | Pfam | PF00854 | POT family | 1086 | 1443 | 1.1E-66 |
| 27 | g11732.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 1054 | - |
| 38 | g11732.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1055 | 1077 | - |
| 20 | g11732.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1078 | 1088 | - |
| 32 | g11732.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1089 | 1111 | - |
| 28 | g11732.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1112 | 1116 | - |
| 37 | g11732.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1117 | 1138 | - |
| 23 | g11732.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1139 | 1158 | - |
| 35 | g11732.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1159 | 1177 | - |
| 26 | g11732.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1178 | 1196 | - |
| 34 | g11732.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1197 | 1216 | - |
| 21 | g11732.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1217 | 1271 | - |
| 41 | g11732.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1272 | 1290 | - |
| 30 | g11732.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1291 | 1320 | - |
| 36 | g11732.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1321 | 1341 | - |
| 19 | g11732.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1342 | 1352 | - |
| 39 | g11732.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1353 | 1376 | - |
| 29 | g11732.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1377 | 1387 | - |
| 33 | g11732.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1388 | 1410 | - |
| 24 | g11732.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1411 | 1421 | - |
| 31 | g11732.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1422 | 1443 | - |
| 25 | g11732.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1444 | 1454 | - |
| 40 | g11732.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1455 | 1473 | - |
| 22 | g11732.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1474 | 1508 | - |
| 15 | g11732.t3 | SUPERFAMILY | SSF48371 | ARM repeat | 1 | 900 | 1.1E-51 |
| 16 | g11732.t3 | SUPERFAMILY | SSF103473 | MFS general substrate transporter | 1020 | 1486 | 2.81E-11 |
| 14 | g11732.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1055 | 1077 | - |
| 8 | g11732.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1089 | 1111 | - |
| 10 | g11732.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1115 | 1134 | - |
| 11 | g11732.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1155 | 1177 | - |
| 9 | g11732.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1197 | 1219 | - |
| 7 | g11732.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1354 | 1376 | - |
| 6 | g11732.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1386 | 1408 | - |
| 13 | g11732.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1421 | 1443 | - |
| 12 | g11732.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1453 | 1475 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0022857 | transmembrane transporter activity | MF |
KEGG
Orthology
- This transcript has been annotated with K25202 (importin-13)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
