General information for g11732.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Importin-13.
Parent gene
- The parent gene g11732 is located on chr_1: 18115562..18117378 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11732 | g11732.t5 | TSS | g11732.t5 | 18109971 | 18109971 |
| chr_1 | g11732 | g11732.t5 | isoform | g11732.t5 | 18110031 | 18111069 |
| chr_1 | g11732 | g11732.t5 | exon | g11732.t5.exon1 | 18110031 | 18110142 |
| chr_1 | g11732 | g11732.t5 | cds | g11732.t5.CDS1 | 18110031 | 18110142 |
| chr_1 | g11732 | g11732.t5 | exon | g11732.t5.exon2 | 18110234 | 18110439 |
| chr_1 | g11732 | g11732.t5 | cds | g11732.t5.CDS2 | 18110234 | 18110439 |
| chr_1 | g11732 | g11732.t5 | exon | g11732.t5.exon3 | 18110497 | 18111069 |
| chr_1 | g11732 | g11732.t5 | cds | g11732.t5.CDS3 | 18110497 | 18111069 |
| chr_1 | g11732 | g11732.t5 | TTS | g11732.t5 | 18111065 | 18111065 |
Sequences
>g11732.t5 Gene=g11732 Length=891
ATGGAAACTCTAGATAATTTGGAACAAGCAGTTAATCTTTTTTATAAGAGTCAATCTACC
GATCAAGCACAATTAAATGAATATCTCACAATACAGCAAAAGAGTCAATTGGCTTGGCAA
TGGTCATGGGAATTTCTTGATTTTTCGAGAACAATTGAAGTGCAATTTTTCGGAGCAACA
ACTTTGCATATGAAAATCCAAAAAAATTTCTTAGAAGTTCCCGAATCTATGAGACAAGAA
TTGAAAGAAAAGTTACTGCAAAAAATTATCGAATTTGGTAGTGGAACAAAATTAGTTCTT
AATAGATTATCTATGTGTTTGAGTGCTTTTATTGTTCATATGCTTAAAGAATGGCCATCG
GCAATAAATGATGTGATAGATATGTTTCTTAATCGGCAACTTCCAAATATAACTCAACAA
ACACAACAATGGATATTATTCGATGTTCTTTCAAGTATTCCTGAGGAAGCTTGCAATATA
ATAACCGTACAACGAGCTCAAGTGAAGCAGGAAGTTTATAAAAATTCAACAGTTGTTTTA
AAAACGTTGGAGCAATTTATCAATACTAAATGCGAAAAACATCAACTTGAGGATGAGGAT
ATAATTGCTCTTCAAAATGTAGCAAAATGCTGTCAAAATTGGTTCAAAAATGGACTCATA
GTTCTCGATGGTTGTCAAGAAATTACAACACAGCTATTGAAATTAGTATCGAAAATTTAT
TGGTCAATATTAGAAACAGATGGTTGTCTCTCACCTGATGAAAGTGAACTTACAGAGACA
TGTTTAAAAGCTCTATCATCTATGATGGCTCAACCAGACGCATATAAATATTCCAATTCA
GCTCTCACACTAATGCGAATGTTTTTGGAATCACTTAGTCCTATAGTAAAA
>g11732.t5 Gene=g11732 Length=297
METLDNLEQAVNLFYKSQSTDQAQLNEYLTIQQKSQLAWQWSWEFLDFSRTIEVQFFGAT
TLHMKIQKNFLEVPESMRQELKEKLLQKIIEFGSGTKLVLNRLSMCLSAFIVHMLKEWPS
AINDVIDMFLNRQLPNITQQTQQWILFDVLSSIPEEACNIITVQRAQVKQEVYKNSTVVL
KTLEQFINTKCEKHQLEDEDIIALQNVAKCCQNWFKNGLIVLDGCQEITTQLLKLVSKIY
WSILETDGCLSPDESELTETCLKALSSMMAQPDAYKYSNSALTLMRMFLESLSPIVK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g11732.t5 | Gene3D | G3DSA:1.25.10.10 | - | 52 | 297 | 0 |
| 1 | g11732.t5 | PANTHER | PTHR12363:SF33 | IMPORTIN-13 | 2 | 290 | 0 |
| 2 | g11732.t5 | PANTHER | PTHR12363 | TRANSPORTIN 3 AND IMPORTIN 13 | 2 | 290 | 0 |
| 3 | g11732.t5 | SUPERFAMILY | SSF48371 | ARM repeat | 1 | 290 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
