Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11732 g11732.t6 TSS g11732.t6 18113547 18113547
chr_1 g11732 g11732.t6 isoform g11732.t6 18114377 18115562
chr_1 g11732 g11732.t6 exon g11732.t6.exon1 18114377 18115562
chr_1 g11732 g11732.t6 cds g11732.t6.CDS1 18114564 18115562
chr_1 g11732 g11732.t6 TTS g11732.t6 18115764 18115764

Sequences

>g11732.t6 Gene=g11732 Length=1186
TTTACTCGTTTATGCATCATTATTGTTGATTGGTGTTGGAAATGGTTTTCTTCGAGCTTG
TATAACAACACTAGGTGCAAATCAGTATATTTTACCACAACAAAGACTTGATCTCGATCG
TTATTTTTCTGGATATTACTTTTTCTATTATGTGGGAATATTAATAGGAAAAATTTTGCC
TCCATATATGAGAAAATCAGTTCTTTTAACATCATATTGTATGGAAATTGGAGAATGCTA
TACAACTGTTTTTGGTTTTTTAACAATCACATTTTTGATATCTTGGATTTTATTTCTGAG
TGGATTAAAATTATATAAAAAGGAATATCCAACACTAGACAATACTATGATAAAAACAAT
CGACTGCATTTTACATGCCGTTATTAGAAAAATTTGTTTAAAATCAACTGAAAAAAATTT
TCTTGACAATTCTATTGGAAGACATTCTCAAGAATTTGTTGAGGATGTGAGGACATTTTT
AAAAATTATAAAATTGTTCCTTCCATTGCCAATTTTTTACGCGTTACTCAATCAACAGGA
CTCAACCTTTACTTTTCAAGCTACTTTGACTGATACTAACATAATGGGAATCGAAATTCA
ACCAGATCAGTTTAAAAGCATTGGGCCAATCATTTTATTAATTCTTATTCCAATTTGGGA
AAAAATTATTACTCCACTGTTAACAAGATGTGGAATTTATTTAAGTTCTCTTGAGTGTAT
GTTCATTGGTTGTCTTTTTGCAACACTGAGCTTTGTTTGTGCAGGTTTATTACAACATTT
TATAATTGTTGAGAGTAGTGTGAAGCAGTATTCAGTGTTATGGCAATTTCCCCAATTTTT
ATTTATAATGATTGCTGAACTTCTAATTTCTATTCATGGACTGAAATATGCTTATACCAA
TGCACCAAGTAGTATGAAATCATTATTAACTGCAATATTTTTCATGAATAATGCCTTTGG
AAATTTATTGGTGATAATTATTACTCAAATTGGTTTGTTTAAAGAAAATCATGCTATGGA
TTTTCTTTTTTATGCATTCTTTATGTTAATAGCAACAATATTGATTAAATTTTTAGCACA
TTCTCATGACAAAGACTTTTCACAAGATATAAATGAAGAAAAAACTTTTGAAGCATTTAT
TTGTGTTAATGAAATTCAAGCAAGTAATATGGAAGAAAACATCTAA

>g11732.t6 Gene=g11732 Length=332
MRKSVLLTSYCMEIGECYTTVFGFLTITFLISWILFLSGLKLYKKEYPTLDNTMIKTIDC
ILHAVIRKICLKSTEKNFLDNSIGRHSQEFVEDVRTFLKIIKLFLPLPIFYALLNQQDST
FTFQATLTDTNIMGIEIQPDQFKSIGPIILLILIPIWEKIITPLLTRCGIYLSSLECMFI
GCLFATLSFVCAGLLQHFIIVESSVKQYSVLWQFPQFLFIMIAELLISIHGLKYAYTNAP
SSMKSLLTAIFFMNNAFGNLLVIIITQIGLFKENHAMDFLFYAFFMLIATILIKFLAHSH
DKDFSQDINEEKTFEAFICVNEIQASNMEENI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g11732.t6 Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains 4 316 1.0E-55
3 g11732.t6 PANTHER PTHR11654 OLIGOPEPTIDE TRANSPORTER-RELATED 14 203 1.1E-45
5 g11732.t6 PANTHER PTHR11654:SF89 SOLUTE CARRIER FAMILY 15 MEMBER 1 14 203 1.1E-45
2 g11732.t6 PANTHER PTHR11654 OLIGOPEPTIDE TRANSPORTER-RELATED 207 294 1.1E-45
4 g11732.t6 PANTHER PTHR11654:SF89 SOLUTE CARRIER FAMILY 15 MEMBER 1 207 294 1.1E-45
1 g11732.t6 Pfam PF00854 POT family 8 267 6.3E-52
21 g11732.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 19 -
25 g11732.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 20 40 -
15 g11732.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 41 95 -
24 g11732.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 96 114 -
20 g11732.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 115 144 -
23 g11732.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 145 165 -
17 g11732.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 166 176 -
28 g11732.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 177 200 -
19 g11732.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 201 211 -
27 g11732.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 212 234 -
16 g11732.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 235 245 -
26 g11732.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 246 267 -
18 g11732.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 268 278 -
22 g11732.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 279 297 -
14 g11732.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 298 332 -
12 g11732.t6 SUPERFAMILY SSF103473 MFS general substrate transporter 8 310 3.53E-7
11 g11732.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 21 40 -
8 g11732.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 149 171 -
10 g11732.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 178 200 -
9 g11732.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 210 232 -
6 g11732.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 245 267 -
7 g11732.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 277 299 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0055085 transmembrane transport BP
GO:0022857 transmembrane transporter activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values