General information for g11745.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as histone-arginine N-methyltransferase.
Parent gene
- The parent gene g11745 is located on chr_1: 18214627..18214884 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11745 | g11745.t4 | isoform | g11745.t4 | 18211559 | 18212180 |
| chr_1 | g11745 | g11745.t4 | exon | g11745.t4.exon1 | 18211559 | 18211715 |
| chr_1 | g11745 | g11745.t4 | cds | g11745.t4.CDS1 | 18211560 | 18211715 |
| chr_1 | g11745 | g11745.t4 | exon | g11745.t4.exon2 | 18211775 | 18212180 |
| chr_1 | g11745 | g11745.t4 | cds | g11745.t4.CDS2 | 18211775 | 18212110 |
| chr_1 | g11745 | g11745.t4 | TSS | g11745.t4 | NA | NA |
| chr_1 | g11745 | g11745.t4 | TTS | g11745.t4 | NA | NA |
Sequences
>g11745.t4 Gene=g11745 Length=563
TATTAAAAAAAAGACTCTCATTTTGGAATATACTGGAGAAGTTTTATTTAAAGAAACTTT
TAGACAACGAATGCAAACAATATATAAAAACGATCAGCATCATTATTGTCTTGAACTAAG
TAATGGTTTAGTACTTGACGGTCATCGAATGGGATCTTTATGTCGTTTTGTTAATCATTC
ATGTAAACCAAACTGTAGCATGGCTAAAATTTATGTTGATGGTTTACCGAGAATGATATT
ACAAGCTGAAGAAGATATAAAAGCAGGAACCGAGCTCAATTATGATTATAAGTTTGATAA
TTTTGAAGATATGACACCACAACAATGCTTTTGTGGTGCTGACACTTGTAGAGGGACATT
GAGTGCTGCTCAAAAGACACCACGACGAATGAGTTTATCATTTAAGGACGGTGAAGTTGT
GAAAAAGAATGGAAGAAAGAGTAAAACAACATCTACTATTCCAAAAGCAAATTCATGTTT
CCTCATGAGAAATCTTCGTAAAGTAGAAAAACATCATCCAGGACTGATCGCTTACTACCA
AAATTTAAAAAACGGAATAGAGG
>g11745.t4 Gene=g11745 Length=164
MQTIYKNDQHHYCLELSNGLVLDGHRMGSLCRFVNHSCKPNCSMAKIYVDGLPRMILQAE
EDIKAGTELNYDYKFDNFEDMTPQQCFCGADTCRGTLSAAQKTPRRMSLSFKDGEVVKKN
GRKSKTTSTIPKANSCFLMRNLRKVEKHHPGLIAYYQNLKNGIE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11745.t4 | Gene3D | G3DSA:2.170.270.10 | SET domain | 1 | 104 | 0.000000 |
| 2 | g11745.t4 | PANTHER | PTHR46147:SF3 | HISTONE-LYSINE N-METHYLTRANSFERASE ASH1 | 1 | 97 | 0.000000 |
| 3 | g11745.t4 | PANTHER | PTHR46147 | HISTONE-LYSINE N-METHYLTRANSFERASE ASH1 | 1 | 97 | 0.000000 |
| 1 | g11745.t4 | Pfam | PF00856 | SET domain | 24 | 73 | 0.000000 |
| 7 | g11745.t4 | ProSiteProfiles | PS50280 | SET domain profile. | 1 | 74 | 10.517000 |
| 8 | g11745.t4 | ProSiteProfiles | PS50868 | Post-SET domain profile. | 82 | 98 | 9.314000 |
| 5 | g11745.t4 | SMART | SM00317 | set_7 | 12 | 80 | 0.000048 |
| 4 | g11745.t4 | SUPERFAMILY | SSF82199 | SET domain | 6 | 95 | 0.000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
