General information for g11748.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11748 is located on chr_1: 18218381..18234049 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11748 | g11748.t13 | TTS | g11748.t13 | 18216730 | 18216730 |
| chr_1 | g11748 | g11748.t13 | isoform | g11748.t13 | 18217510 | 18218686 |
| chr_1 | g11748 | g11748.t13 | exon | g11748.t13.exon1 | 18217510 | 18217528 |
| chr_1 | g11748 | g11748.t13 | exon | g11748.t13.exon2 | 18217592 | 18218284 |
| chr_1 | g11748 | g11748.t13 | exon | g11748.t13.exon3 | 18218347 | 18218686 |
| chr_1 | g11748 | g11748.t13 | cds | g11748.t13.CDS1 | 18218381 | 18218590 |
| chr_1 | g11748 | g11748.t13 | TSS | g11748.t13 | NA | NA |
Sequences
>g11748.t13 Gene=g11748 Length=1052
GGTTTATTCTTAGAAGGATGTCGCTGGAATCGTCAATTTCATGTTCTCGATGAATCCTTT
CCAAGAGTATTGTTCGATACACTTCCTGTAATAACAATGACGCCAACAATGAAGACTGAA
GATAATCAGTATGATGATGAGAAAAAATACGAATGTCCAATTTATAAAACTATTGAGCGA
CGCGGAATTTTATCAACTACAGGACATTCTTCAAATTTCGTCATGTTTATTCAACTTAAT
ACTGAAAAAAACCAAAATCATTGGATAAATCGAGGCGCTGCATCAATTTTGAGTCTGAAT
GATTAAAAAATTTTACATGTCACATATGTATTTTGATATCAATTTATTGCAGAATTCCCA
AGTATAAAAAGGCACATGTTAGTTTTTAGATACATCTTTTTTAATTTGCAAATATTTCAC
CAAATGGAATGACAATAGTTTTGAATTTTTCATTCTGGAATAATGTTTGATAGAAAACTG
AGTCAATAACTTCGGATAAGGCTGATGTTCCTTCTTCCTTTTTACCGTTCCAAACAATTT
CTTTTCCATTGCTTAAAAATGGAAACTTTTCATTAATGATACCGAAAGAATTAAGCCAGA
ATTGAGTAGCATTTATAGAGTGAATAATTTCGTATGCTGAACTAATGTTTGTACACCATA
ATGACACAGAAGTAGCATTCTTTGCAAGTGCTATCCCTTCCTTGATTGTACGATACACTT
CATATGAAATGACCGAAGAATTCTCATTACTAATCATAGTGTGAGGACAAACCACAATTC
GATTTCCAATCACTTCAAAACCTTTTTCAGAGAGCATTTTAACGCCTTCAACCTCTTTTG
ATGGTTTAATTTTATTGCATAAAAGAGTTTTGAATTTTTCATTTATGGATTCTTGAACGA
TGATCAAACTTATAATCTCATGATCATCTGACTGAAGAATTGCTGCTATGAAATCTGATG
CTGTTTCAATATCTGCTGTTTCAGTAATTATAAAAGTGGAACACAATTTACGTAGTTTAG
TCTTCAAAATTAATTTTTGAATTATAACTCAT
>g11748.t13 Gene=g11748 Length=69
MTPTMKTEDNQYDDEKKYECPIYKTIERRGILSTTGHSSNFVMFIQLNTEKNQNHWINRG
AASILSLND
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g11748.t13 | PANTHER | PTHR46454 | DYNEIN AXONEMAL HEAVY CHAIN 7-RELATED | 7 | 68 | 0 |
| 3 | g11748.t13 | PANTHER | PTHR46454:SF15 | DYNEIN AXONEMAL HEAVY CHAIN 1 | 7 | 68 | 0 |
| 1 | g11748.t13 | Pfam | PF18199 | Dynein heavy chain C-terminal domain | 6 | 65 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
