General information for g1175.t85
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1175 is located on chr_3: 8489656..8492512 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1175 | g1175.t85 | TTS | g1175.t85 | 8488936 | 8488936 |
| chr_3 | g1175 | g1175.t85 | isoform | g1175.t85 | 8489656 | 8492512 |
| chr_3 | g1175 | g1175.t85 | exon | g1175.t85.exon1 | 8489656 | 8489837 |
| chr_3 | g1175 | g1175.t85 | exon | g1175.t85.exon2 | 8489975 | 8490246 |
| chr_3 | g1175 | g1175.t85 | cds | g1175.t85.CDS1 | 8490015 | 8490246 |
| chr_3 | g1175 | g1175.t85 | exon | g1175.t85.exon3 | 8490306 | 8490373 |
| chr_3 | g1175 | g1175.t85 | cds | g1175.t85.CDS2 | 8490306 | 8490373 |
| chr_3 | g1175 | g1175.t85 | exon | g1175.t85.exon4 | 8490506 | 8490571 |
| chr_3 | g1175 | g1175.t85 | cds | g1175.t85.CDS3 | 8490506 | 8490562 |
| chr_3 | g1175 | g1175.t85 | exon | g1175.t85.exon5 | 8492426 | 8492512 |
| chr_3 | g1175 | g1175.t85 | TSS | g1175.t85 | NA | NA |
Sequences
>g1175.t85 Gene=g1175 Length=675
TTATCGTGGAGGAGGAAAGTTTGGCCTCATCATCCCAGGGGGTGGTGCACGAGGCATTCC
GGGTACAACCATTGGTGGTCTCTATTACCATATGAGATGGTGCTGGGCCCATTCCTCTCA
CTGGTCCAGTTAATCCAGGAGCTGCACCTTTTACAATTATATGAAAACATACCTGCAGCT
CGTCCAACGCCTGGACCTCCAGGAATTGGCACACGCGGCATACCTTCTTCTGGTGGCGGT
GGACCTTCCACAGTTAATGAAACTATATTTTCTCCTCGAAGTAACACAAATCCAAGAACT
CTTTTTTCTTCACGATCTGGCAATTTGGTATTCTTCTGTTTAATTTTTCTGAATTCTTCG
CAGTCTCCTAAAATCAGATTCATATGTTTGTCGAATGCCTTAAAAGTACCAATAAATGTT
CTTGAATCTTGTAGCACAATGCGAACTCGATAGTTCAAGTGCTGAATCATCTTATTATTC
TTTCCGATTGTCTTTTGACAGCTATTTATCTTCCTATTACTTTAGGACTAAATAATCTGC
TTTAAAGTAATAAAAGCAGCAAAATGCTAAAAAAAAGTATTTAATCGGCTTCTTGAAAAT
TTCCCTTTGCTGCAAAGAACAAACAAACAAAGTTTTTTCTTCCCTTGTAAAAAATTTTAA
AAACGAGAATCAAAA
>g1175.t85 Gene=g1175 Length=118
MVLGPFLSLVQLIQELHLLQLYENIPAARPTPGPPGIGTRGIPSSGGGGPSTVNETIFSP
RSNTNPRTLFSSRSGNLVFFCLIFLNSSQSPKIRFICLSNALKVPINVLESCSTMRTR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g1175.t85 | PANTHER | PTHR10701:SF19 | - | 25 | 113 | 6.7E-21 |
| g1175.t85 | PANTHER | PTHR10701 | SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N | 25 | 113 | 6.7E-21 |
| g1175.t85 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 18 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed