Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Prestin.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11758 g11758.t2 TTS g11758.t2 18258487 18258487
chr_1 g11758 g11758.t2 isoform g11758.t2 18259412 18260728
chr_1 g11758 g11758.t2 exon g11758.t2.exon1 18259412 18260266
chr_1 g11758 g11758.t2 cds g11758.t2.CDS1 18259412 18260266
chr_1 g11758 g11758.t2 exon g11758.t2.exon2 18260321 18260728
chr_1 g11758 g11758.t2 cds g11758.t2.CDS2 18260321 18260473
chr_1 g11758 g11758.t2 TSS g11758.t2 NA NA

Sequences

>g11758.t2 Gene=g11758 Length=1263
ACATATGTTGAAATTTTTAGTCAAGTAAACAGCAACCGCTTTAATGTAACATCGATAATC
TTATCAACTCTAACAATCTTGCTACTTTTGCTCAATAATGAAATATTAAAACCAATTTTG
GCAAGAAAAACAAAAATTCCAATTCCTATTGAGCTTTTTGTGGTTGTTGGTGGTACGTTA
TTTTCAAAATATATCAGACTTTATGAAAACTTCAACGTAATACTTATTGGCCATATTCCA
CTTGGATTTCCTAGCATGACAATCTGTAGATTTGATTTATGGAAAGAACTCTTATTAGAT
TCTATTGCAATTAGCATAGTCAGCTATTCTATTACTGTTTCCATGGCTTTGATTTTGGGA
CAAAAGTTGAAATATGAAATTAACTTCAACCAAGAATTACTTGCAATGGGTTTAGGAAAC
ATTTTTGGATCATTTTTTTCATGTTTTCCTTATTCGGCATCTTTATCAAGATCACTTATT
CAACAAAATGTTGGAGGGAAGACACAACTTGCATCACTGATTTCATGTGTATTACTTTTC
TTTGTACTTATGTGGATTGGACCATTTTTTGAAGATCTTCCTCGTTGTATTTTGGCTTCA
ATAATAGTTATAGCAATTAAAGGCATGGTCATGCAAGTCAAAGACTTTAAAAATTTTAAA
AGAAAGAGTAACAGTGATGCTCTTGTATGGATGTGCACATTTTTAGCAGTAATTTTTTTA
TCAATAGACATTGGATTGCTTATCGGTATATGTTTAAGCATTTTGTGTATTTTTTGTAAT
GGTTTGAAATGTTATGTTTGCGTTTTGGGAAATGTTCCAAACACAGATCTTTTTTTAGAT
ATTGATAATTTTCAAAAAGCTGTTGAAATACCTTATGTAAAAATTCTTCAGCTTTCTGGT
TCTATTAATTTTGCAACTAAAGTCTTTTTGCGAAATCAAATCTGCAGTAAATTGAAAATT
AATTTGATAAAGGAATTAAAAATTAAAGAACTTAATAACAATGCAGATAAGTCAAATAAG
AACTTAACATCTAATATAAATTTCAAGCATTTAATTCTAGATTTTGGATCATTGACTAGT
ATAGATGCAAGTTCAATTGTAATGCTTTCAGATTTGATAAAAGACTTGAACAAACTAGAT
CTGAAAGTTTCTATTACGTCTTGCTCTTCTTCAAGAATTTATGAGGTTCTATTAAAAAAT
GAATTTGAATTTATGCACATAATGTATCCTTCTATACAAGATGTAGAAGTCGGAATTTTG
TGA

>g11758.t2 Gene=g11758 Length=335
MTICRFDLWKELLLDSIAISIVSYSITVSMALILGQKLKYEINFNQELLAMGLGNIFGSF
FSCFPYSASLSRSLIQQNVGGKTQLASLISCVLLFFVLMWIGPFFEDLPRCILASIIVIA
IKGMVMQVKDFKNFKRKSNSDALVWMCTFLAVIFLSIDIGLLIGICLSILCIFCNGLKCY
VCVLGNVPNTDLFLDIDNFQKAVEIPYVKILQLSGSINFATKVFLRNQICSKLKINLIKE
LKIKELNNNADKSNKNLTSNINFKHLILDFGSLTSIDASSIVMLSDLIKDLNKLDLKVSI
TSCSSSRIYEVLLKNEFEFMHIMYPSIQDVEVGIL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
18 g11758.t2 CDD cd07042 STAS_SulP_like_sulfate_transporter 199 317 7.87983E-11
6 g11758.t2 Gene3D G3DSA:3.30.750.24 - 180 332 8.9E-24
3 g11758.t2 PANTHER PTHR11814:SF180 ANION TRANSPORTER SULP-8A 3 330 2.5E-94
4 g11758.t2 PANTHER PTHR11814 SULFATE TRANSPORTER 3 330 2.5E-94
1 g11758.t2 Pfam PF00916 Sulfate permease family 5 148 8.1E-41
2 g11758.t2 Pfam PF01740 STAS domain 202 329 1.4E-12
7 g11758.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 11 -
14 g11758.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 36 -
12 g11758.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 37 47 -
16 g11758.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 48 64 -
8 g11758.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 65 84 -
17 g11758.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 85 105 -
11 g11758.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 106 110 -
15 g11758.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 111 131 -
9 g11758.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 132 142 -
13 g11758.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 143 170 -
10 g11758.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 171 335 -
24 g11758.t2 ProSiteProfiles PS50801 STAS domain profile. 198 312 15.385
5 g11758.t2 SUPERFAMILY SSF52091 SpoIIaa-like 204 312 2.75E-10
21 g11758.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 13 35 -
19 g11758.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 48 70 -
20 g11758.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 85 104 -
23 g11758.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 111 128 -
22 g11758.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 148 170 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0055085 transmembrane transport BP
GO:0015116 sulfate transmembrane transporter activity MF
GO:0008272 sulfate transport BP
GO:0016021 integral component of membrane CC
GO:0008271 secondary active sulfate transmembrane transporter activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed