Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative DnaJ homolog subfamily C member 5-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11761 g11761.t14 isoform g11761.t14 18272504 18273267
chr_1 g11761 g11761.t14 exon g11761.t14.exon1 18272504 18272784
chr_1 g11761 g11761.t14 cds g11761.t14.CDS1 18272505 18272784
chr_1 g11761 g11761.t14 exon g11761.t14.exon2 18273248 18273267
chr_1 g11761 g11761.t14 cds g11761.t14.CDS2 18273248 18273267
chr_1 g11761 g11761.t14 TSS g11761.t14 18273485 18273485
chr_1 g11761 g11761.t14 TTS g11761.t14 NA NA

Sequences

>g11761.t14 Gene=g11761 Length=301
ATGGATAAAAGAAAGCTATCCACCTCTGGCGATTCTTTATATGAAATTTTGGGACTGCCA
AAGACTTCATCACCAGAAGATATAAAGAAAACTTATAGAAAACTTGCTCTCAAATATCAT
CCAGATAAGAATCCTGAAAATCCTGAGGCTGCAGAAAAATTTAAAGAAGTCAATAGAGCA
CATAGCATATTAAGTGATCAAACTAAACGAAATATTTATGACAACTATGGTTCACTTGGA
TTATATATAGCTGAACAATTTGGTGAAGAAAATGTCAATGCATATTTTGTAGTGACATCA
C

>g11761.t14 Gene=g11761 Length=100
MDKRKLSTSGDSLYEILGLPKTSSPEDIKKTYRKLALKYHPDKNPENPEAAEKFKEVNRA
HSILSDQTKRNIYDNYGSLGLYIAEQFGEENVNAYFVVTS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g11761.t14 CDD cd06257 DnaJ 14 66 9.77991E-27
8 g11761.t14 Gene3D G3DSA:1.10.287.110 - 1 100 7.7E-36
2 g11761.t14 PANTHER PTHR44027 DNAJ HOMOLOG SUBFAMILY C MEMBER 5 HOMOLOG 2 100 8.2E-52
4 g11761.t14 PRINTS PR00625 DnaJ domain signature 14 32 1.9E-26
3 g11761.t14 PRINTS PR00625 DnaJ domain signature 32 47 1.9E-26
6 g11761.t14 PRINTS PR00625 DnaJ domain signature 49 69 1.9E-26
5 g11761.t14 PRINTS PR00625 DnaJ domain signature 69 88 1.9E-26
1 g11761.t14 Pfam PF00226 DnaJ domain 13 74 1.6E-28
10 g11761.t14 ProSitePatterns PS00636 Nt-dnaJ domain signature. 54 73 -
12 g11761.t14 ProSiteProfiles PS50076 dnaJ domain profile. 12 77 23.704
11 g11761.t14 SMART SM00271 dnaj_3 11 69 2.8E-28
7 g11761.t14 SUPERFAMILY SSF46565 Chaperone J-domain 12 94 1.13E-29

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values