Gene loci information

Transcript annotation

  • This transcript has been annotated as DnaJ homolog subfamily C member 5-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11761 g11761.t9 TTS g11761.t9 18270213 18270213
chr_1 g11761 g11761.t9 isoform g11761.t9 18271221 18273267
chr_1 g11761 g11761.t9 exon g11761.t9.exon1 18271221 18271403
chr_1 g11761 g11761.t9 cds g11761.t9.CDS1 18271227 18271403
chr_1 g11761 g11761.t9 exon g11761.t9.exon2 18272276 18272434
chr_1 g11761 g11761.t9 cds g11761.t9.CDS2 18272276 18272434
chr_1 g11761 g11761.t9 exon g11761.t9.exon3 18272493 18272784
chr_1 g11761 g11761.t9 cds g11761.t9.CDS3 18272493 18272784
chr_1 g11761 g11761.t9 exon g11761.t9.exon4 18273248 18273267
chr_1 g11761 g11761.t9 cds g11761.t9.CDS4 18273248 18273267
chr_1 g11761 g11761.t9 TSS g11761.t9 18273485 18273485

Sequences

>g11761.t9 Gene=g11761 Length=654
ATGGATAAAAGAAAGCTATCCACCTCTGGCGATTCTTTATATGAAATTTTGGGACTGCCA
AAGACTTCATCACCAGAAGATATAAAGAAAACTTATAGAAAACTTGCTCTCAAATATCAT
CCAGATAAGAATCCTGAAAATCCTGAGGCTGCAGAAAAATTTAAAGAAGTCAATAGAGCA
CATAGCATATTAAGTGATCAAACTAAACGAAATATTTATGACAACTATGGTTCACTTGGA
TTATATATAGCTGAACAATTTGGTGAAGAAAATGTCAATGCATATTTTGTAGTGACATCA
CCTGCCTGCAAAGCACTTTTCTTGATTTGTTGTATTGCAACCGGTTGTTATTGCTGTTGC
TGTTGCTGCTGCTGCTGTAACTTTTGTTTTGGAAAATATAAACCTACACCACCTCCTGAT
GGCGACTATCATCATCTTAATGTAATTATAACCTTTTTATTTAAATTACTTGAGGATATG
AATGATGGAGAAGACATTGTCACATCTCAGCCAGGTCCAGGTCAGGCAACGTCAAATATT
CCAGCATTCGCTATGCCACCACCGTCAGCAACGAATCCATTTGCAAGTGAAACATCAAAT
CTTAATCAAGGTGGAACACGCACTTACACACCAGGTGAACGATTCTAAATCAAA

>g11761.t9 Gene=g11761 Length=215
MDKRKLSTSGDSLYEILGLPKTSSPEDIKKTYRKLALKYHPDKNPENPEAAEKFKEVNRA
HSILSDQTKRNIYDNYGSLGLYIAEQFGEENVNAYFVVTSPACKALFLICCIATGCYCCC
CCCCCCNFCFGKYKPTPPPDGDYHHLNVIITFLFKLLEDMNDGEDIVTSQPGPGQATSNI
PAFAMPPPSATNPFASETSNLNQGGTRTYTPGERF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g11761.t9 CDD cd06257 DnaJ 14 66 2.88466E-28
8 g11761.t9 Gene3D G3DSA:1.10.287.110 - 1 103 4.5E-35
2 g11761.t9 PANTHER PTHR44027 DNAJ HOMOLOG SUBFAMILY C MEMBER 5 HOMOLOG 2 208 1.4E-79
4 g11761.t9 PRINTS PR00625 DnaJ domain signature 14 32 1.5E-25
3 g11761.t9 PRINTS PR00625 DnaJ domain signature 32 47 1.5E-25
6 g11761.t9 PRINTS PR00625 DnaJ domain signature 49 69 1.5E-25
5 g11761.t9 PRINTS PR00625 DnaJ domain signature 69 88 1.5E-25
1 g11761.t9 Pfam PF00226 DnaJ domain 13 74 9.7E-28
10 g11761.t9 ProSitePatterns PS00636 Nt-dnaJ domain signature. 54 73 -
12 g11761.t9 ProSiteProfiles PS50076 dnaJ domain profile. 12 77 23.704
11 g11761.t9 SMART SM00271 dnaj_3 11 69 2.8E-28
7 g11761.t9 SUPERFAMILY SSF46565 Chaperone J-domain 12 100 1.88E-29

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values