Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Dual specificity protein kinase TTK.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11762 g11762.t43 TSS g11762.t43 18273612 18273612
chr_1 g11762 g11762.t43 isoform g11762.t43 18273673 18274680
chr_1 g11762 g11762.t43 exon g11762.t43.exon1 18273673 18273770
chr_1 g11762 g11762.t43 exon g11762.t43.exon2 18273835 18273904
chr_1 g11762 g11762.t43 exon g11762.t43.exon3 18273966 18274680
chr_1 g11762 g11762.t43 cds g11762.t43.CDS1 18274051 18274680
chr_1 g11762 g11762.t43 TTS g11762.t43 18275217 18275217

Sequences

>g11762.t43 Gene=g11762 Length=883
ATGTCATTATTTTTTCCCAAACGCATAAGTGAATTAACAACAATTGATTCAGATCTTGAA
ACTCCAGAAAAATCAAAAAACAAAAACTCAACAAGGAACTATCTTTCCAAAAAGAATTAA
TGATATCAAAGAATCAGATTCTGAGAATGATGAAGAAGAAGAAGACAAATTAAATTGTGC
GATACTAAATGACTCTTTTGTGCTAACAATTGAGAATCTTTCAACAATTGAGAAAGATCC
CACGAAGCAACCTATGATGCAACAGCAGCAACCTAAAATTCTTTTTCGAACGCCTATTAC
CAGACCATTTCCTTCATCTTCCATAATTGGATCGCAATTAGATCCAAAGCTACTCTCTTC
AATTCAGAAAATGTCATCTATTAAAGAGTCAATTATTAGAGAGAAACCAAAGGAAAACTG
TATAATTATCAACAAAATTGAGTATGAAATTGATAAAAAAATTGGTGCTGGTGGTTCATC
AACAGTTTTCCTCGCTCGAGGTTGTAAATCAGGAAAAGAATGTGCTATAAAATTGGTAAA
TTTAGATGGAGATCCACAAGTTATTGAAGGATATTTAAATGAAACAAAGCTTCTCGCAAG
GCTGCAAGGCAATATTAATGTAATTGCATTGTACGACTATTGTCATTTGCCAGATAAGAA
AATTCTTTACATGGTAATGGAAAAAGGAGAATCAGATCTACATAAAATATTGCAAAAATA
CACTTCACATATACCTTTATTTACGTTAATGAATTATTGGCATCAAATGTTGCAAGCAGT
GAATTTTATTCATGAGAATGGAATAATTCATAGTGATTTGAAACCTGCTAATTTTTTGGC
TGTAGGTGATAGGTTAAAATTAATTGATTTCGGAATTGCTTCA

>g11762.t43 Gene=g11762 Length=210
MMQQQQPKILFRTPITRPFPSSSIIGSQLDPKLLSSIQKMSSIKESIIREKPKENCIIIN
KIEYEIDKKIGAGGSSTVFLARGCKSGKECAIKLVNLDGDPQVIEGYLNETKLLARLQGN
INVIALYDYCHLPDKKILYMVMEKGESDLHKILQKYTSHIPLFTLMNYWHQMLQAVNFIH
ENGIIHSDLKPANFLAVGDRLKLIDFGIAS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g11762.t43 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 57 146 2.6E-20
8 g11762.t43 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 147 210 8.9E-16
2 g11762.t43 PANTHER PTHR22974 MIXED LINEAGE PROTEIN KINASE 46 209 2.5E-61
3 g11762.t43 PANTHER PTHR22974:SF21 DUAL SPECIFICITY PROTEIN KINASE TTK 46 209 2.5E-61
1 g11762.t43 Pfam PF00069 Protein kinase domain 64 209 2.5E-31
6 g11762.t43 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 70 93 -
9 g11762.t43 ProSiteProfiles PS50011 Protein kinase domain profile. 64 210 25.22
5 g11762.t43 SMART SM00220 serkin_6 64 210 3.0E-9
4 g11762.t43 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 63 209 1.35E-39

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0007093 mitotic cell cycle checkpoint signaling BP
GO:0004712 protein serine/threonine/tyrosine kinase activity MF
GO:0051304 chromosome separation BP
GO:0005524 ATP binding MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values