General information for g11767.t16
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Mannose-1-phosphate guanyltransferase beta.
Parent gene
- The parent gene g11767 is located on chr_1: 18339929..18341094 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11767 | g11767.t16 | TTS | g11767.t16 | 18339382 | 18339382 |
| chr_1 | g11767 | g11767.t16 | isoform | g11767.t16 | 18339516 | 18340853 |
| chr_1 | g11767 | g11767.t16 | exon | g11767.t16.exon1 | 18339516 | 18339593 |
| chr_1 | g11767 | g11767.t16 | cds | g11767.t16.CDS1 | 18339516 | 18339593 |
| chr_1 | g11767 | g11767.t16 | exon | g11767.t16.exon2 | 18339650 | 18339729 |
| chr_1 | g11767 | g11767.t16 | cds | g11767.t16.CDS2 | 18339650 | 18339729 |
| chr_1 | g11767 | g11767.t16 | exon | g11767.t16.exon3 | 18339788 | 18339865 |
| chr_1 | g11767 | g11767.t16 | cds | g11767.t16.CDS3 | 18339788 | 18339865 |
| chr_1 | g11767 | g11767.t16 | exon | g11767.t16.exon4 | 18339923 | 18340622 |
| chr_1 | g11767 | g11767.t16 | cds | g11767.t16.CDS4 | 18339923 | 18340589 |
| chr_1 | g11767 | g11767.t16 | exon | g11767.t16.exon5 | 18340688 | 18340853 |
| chr_1 | g11767 | g11767.t16 | TSS | g11767.t16 | 18341090 | 18341090 |
Sequences
>g11767.t16 Gene=g11767 Length=1102
ATGACTGAAGAACAAGGAATGCGAGCTTTGATTCTAGTAGGCGGTTATGGCACACGTTTG
AGACCATTGACTTTAAGTCGTCCAAAGCCTCTCGTTGAATTTGCTAATAAACCTATATTA
TTACATCAAATTGAAGCATTGCGTGAAGCTGGTGTTAAAGAAGTAAGTAATATTAGCTGT
ATCTTACAGAGCTGACGAAATGGAACGAGAATTGAAACAAGAAACAGAAAAGTTGGGTGT
CAATTTGATATTTTCACATGAAACTGAACCACTCGGAACCGCAGGTCCTCTTGCTTTAGC
TAAAGATATCCTTTTGAAGAGCCCAGAACCGTTTTTTGTACTAAATTCAGATGTAATTTG
TGACTTTCCATTTCAAGAGTTAGCAAAATTTCATCGAAATCATCAAAAGGAAGGTACTAT
TGTTGTCACTAAAGTGGAAGAACCTTCAAAATATGGTGTAGTTTTATACGACAATAATGG
TTGTATTAAGAGTTTTATTGAGAAACCGCAAGAGTTTGTCAGCAATAAAATCAATGCTGG
CATGTATATTTTAAATCCATCTGTATTGTCTCGGATTCAATTGAAGCCAACATCTATCGA
AAAAGAAATTTTTCCTCTAATGTCCGAAGAGAATGAACTGTATGCATTTGAACTTAATGG
CTTTTGGATGGATATTGGACAACCTAAAGACTTTCTTACTGGAATGTGTTTATATCTTAA
TGCTTTGCGTCATCGTGAGCCTTCACTTTTGTATAACGACGAAGGCGTCGTAGGAAATGT
ATTAGTTGATCCTTCTGCAAAAATTGGCAAAGGTTGCCGAATAGGACCAAATGTCACTAT
CGGTCCTAATTGCGTCATAGAAGATGGCGTTTGTATTAAAAGATGTACGATTCTTAAAGG
GGCAACCGTTAAAAGTCATTCCTGGCTGAATTCGTGCATAATAGGCTGGAGATGCATTGT
AGGTCGTTGGGTAAGACTTGAAGGTATAACTGTATTAGGCGAAGATGTTATAGTAAAAGA
TGAGGTTTTTGTAAACGGTGGACAAGTATTACCACATAAGAGCATTTCTGAAAGTGTTCC
AGAACCCTCTATTATAATGTAA
>g11767.t16 Gene=g11767 Length=300
MERELKQETEKLGVNLIFSHETEPLGTAGPLALAKDILLKSPEPFFVLNSDVICDFPFQE
LAKFHRNHQKEGTIVVTKVEEPSKYGVVLYDNNGCIKSFIEKPQEFVSNKINAGMYILNP
SVLSRIQLKPTSIEKEIFPLMSEENELYAFELNGFWMDIGQPKDFLTGMCLYLNALRHRE
PSLLYNDEGVVGNVLVDPSAKIGKGCRIGPNVTIGPNCVIEDGVCIKRCTILKGATVKSH
SWLNSCIIGWRCIVGRWVRLEGITVLGEDVIVKDEVFVNGGQVLPHKSISESVPEPSIIM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11767.t16 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 2 | 171 | 0 |
| 7 | g11767.t16 | Gene3D | G3DSA:2.160.10.10 | Hexapeptide repeat proteins | 182 | 299 | 0 |
| 3 | g11767.t16 | PANTHER | PTHR22572:SF15 | MANNOSE-1-PHOSPHATE GUANYLTRANSFERASE BETA | 1 | 300 | 0 |
| 4 | g11767.t16 | PANTHER | PTHR22572 | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE | 1 | 300 | 0 |
| 2 | g11767.t16 | Pfam | PF00483 | Nucleotidyl transferase | 4 | 169 | 0 |
| 1 | g11767.t16 | Pfam | PF00132 | Bacterial transferase hexapeptide (six repeats) | 199 | 233 | 0 |
| 5 | g11767.t16 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 6 | 250 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0009058 | biosynthetic process | BP |
| GO:0016779 | nucleotidyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed