General information for g11767.t20
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Mannose-1-phosphate guanyltransferase beta.
Parent gene
- The parent gene g11767 is located on chr_1: 18339929..18341094 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11767 | g11767.t20 | TTS | g11767.t20 | 18339382 | 18339382 |
| chr_1 | g11767 | g11767.t20 | isoform | g11767.t20 | 18339516 | 18341094 |
| chr_1 | g11767 | g11767.t20 | exon | g11767.t20.exon1 | 18339516 | 18339593 |
| chr_1 | g11767 | g11767.t20 | cds | g11767.t20.CDS1 | 18339516 | 18339593 |
| chr_1 | g11767 | g11767.t20 | exon | g11767.t20.exon2 | 18339650 | 18339729 |
| chr_1 | g11767 | g11767.t20 | cds | g11767.t20.CDS2 | 18339650 | 18339729 |
| chr_1 | g11767 | g11767.t20 | exon | g11767.t20.exon3 | 18339788 | 18339865 |
| chr_1 | g11767 | g11767.t20 | cds | g11767.t20.CDS3 | 18339788 | 18339865 |
| chr_1 | g11767 | g11767.t20 | exon | g11767.t20.exon4 | 18339923 | 18340612 |
| chr_1 | g11767 | g11767.t20 | cds | g11767.t20.CDS4 | 18339923 | 18340612 |
| chr_1 | g11767 | g11767.t20 | exon | g11767.t20.exon5 | 18340688 | 18340874 |
| chr_1 | g11767 | g11767.t20 | cds | g11767.t20.CDS5 | 18340688 | 18340853 |
| chr_1 | g11767 | g11767.t20 | exon | g11767.t20.exon6 | 18340982 | 18341094 |
| chr_1 | g11767 | g11767.t20 | TSS | g11767.t20 | 18341090 | 18341090 |
Sequences
>g11767.t20 Gene=g11767 Length=1226
TCTATTGTTATCAAAAGTTGAGTAAAATGAATTTTTGTTGACTCATAAGTTTTTAAAGAA
AAAAAGTCTGTCGACGTCCTCAGTTTTGTTATCGAGTATTTTTTCATTATTAGATTTCCT
TAATAAACAAAAGTATGACTGAAGAACAAGGAATGCGAGCTTTGATTCTAGTAGGCGGTT
ATGGCACACGTTTGAGACCATTGACTTTAAGTCGTCCAAAGCCTCTCGTTGAATTTGCTA
ATAAACCTATATTATTACATCAAATTGAAGCATTGCGTGAAGCTGGTGTTAAAGAAGTAA
CTGTATCTTACAGAGCTGACGAAATGGAACGAGAATTGAAACAAGAAACAGAAAAGTTGG
GTGTCAATTTGATATTTTCACATGAAACTGAACCACTCGGAACCGCAGGTCCTCTTGCTT
TAGCTAAAGATATCCTTTTGAAGAGCCCAGAACCGTTTTTTGTACTAAATTCAGATGTAA
TTTGTGACTTTCCATTTCAAGAGTTAGCAAAATTTCATCGAAATCATCAAAAGGAAGGTA
CTATTGTTGTCACTAAAGTGGAAGAACCTTCAAAATATGGTGTAGTTTTATACGACAATA
ATGGTTGTATTAAGAGTTTTATTGAGAAACCGCAAGAGTTTGTCAGCAATAAAATCAATG
CTGGCATGTATATTTTAAATCCATCTGTATTGTCTCGGATTCAATTGAAGCCAACATCTA
TCGAAAAAGAAATTTTTCCTCTAATGTCCGAAGAGAATGAACTGTATGCATTTGAACTTA
ATGGCTTTTGGATGGATATTGGACAACCTAAAGACTTTCTTACTGGAATGTGTTTATATC
TTAATGCTTTGCGTCATCGTGAGCCTTCACTTTTGTATAACGACGAAGGCGTCGTAGGAA
ATGTATTAGTTGATCCTTCTGCAAAAATTGGCAAAGGTTGCCGAATAGGACCAAATGTCA
CTATCGGTCCTAATTGCGTCATAGAAGATGGCGTTTGTATTAAAAGATGTACGATTCTTA
AAGGGGCAACCGTTAAAAGTCATTCCTGGCTGAATTCGTGCATAATAGGCTGGAGATGCA
TTGTAGGTCGTTGGGTAAGACTTGAAGGTATAACTGTATTAGGCGAAGATGTTATAGTAA
AAGATGAGGTTTTTGTAAACGGTGGACAAGTATTACCACATAAGAGCATTTCTGAAAGTG
TTCCAGAACCCTCTATTATAATGTAA
>g11767.t20 Gene=g11767 Length=363
MTEEQGMRALILVGGYGTRLRPLTLSRPKPLVEFANKPILLHQIEALREAGVKEVTVSYR
ADEMERELKQETEKLGVNLIFSHETEPLGTAGPLALAKDILLKSPEPFFVLNSDVICDFP
FQELAKFHRNHQKEGTIVVTKVEEPSKYGVVLYDNNGCIKSFIEKPQEFVSNKINAGMYI
LNPSVLSRIQLKPTSIEKEIFPLMSEENELYAFELNGFWMDIGQPKDFLTGMCLYLNALR
HREPSLLYNDEGVVGNVLVDPSAKIGKGCRIGPNVTIGPNCVIEDGVCIKRCTILKGATV
KSHSWLNSCIIGWRCIVGRWVRLEGITVLGEDVIVKDEVFVNGGQVLPHKSISESVPEPS
IIM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g11767.t20 | CDD | cd06425 | M1P_guanylylT_B_like_N | 7 | 236 | 0 |
| 6 | g11767.t20 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 7 | 234 | 0 |
| 7 | g11767.t20 | Gene3D | G3DSA:2.160.10.10 | Hexapeptide repeat proteins | 245 | 362 | 0 |
| 3 | g11767.t20 | PANTHER | PTHR22572:SF15 | MANNOSE-1-PHOSPHATE GUANYLTRANSFERASE BETA | 7 | 363 | 0 |
| 4 | g11767.t20 | PANTHER | PTHR22572 | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE | 7 | 363 | 0 |
| 2 | g11767.t20 | Pfam | PF00483 | Nucleotidyl transferase | 9 | 232 | 0 |
| 1 | g11767.t20 | Pfam | PF00132 | Bacterial transferase hexapeptide (six repeats) | 262 | 296 | 0 |
| 5 | g11767.t20 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 7 | 313 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0009058 | biosynthetic process | BP |
| GO:0016779 | nucleotidyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00966 (mannose-1-phosphate guanylyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
