Gene loci information

Transcript annotation

  • This transcript has been annotated as Mannose-1-phosphate guanyltransferase beta.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11767 g11767.t24 TTS g11767.t24 18339382 18339382
chr_1 g11767 g11767.t24 isoform g11767.t24 18339929 18341094
chr_1 g11767 g11767.t24 exon g11767.t24.exon1 18339929 18340622
chr_1 g11767 g11767.t24 cds g11767.t24.CDS1 18339930 18340622
chr_1 g11767 g11767.t24 exon g11767.t24.exon2 18340692 18340854
chr_1 g11767 g11767.t24 cds g11767.t24.CDS2 18340692 18340853
chr_1 g11767 g11767.t24 exon g11767.t24.exon3 18340982 18341094
chr_1 g11767 g11767.t24 TSS g11767.t24 18341090 18341090

Sequences

>g11767.t24 Gene=g11767 Length=970
TCTATTGTTATCAAAAGTTGAGTAAAATGAATTTTTGTTGACTCATAAGTTTTTAAAGAA
AAAAAGTCTGTCGACGTCCTCAGTTTTGTTATCGAGTATTTTTTCATTATTAGTATGACT
GAAGAACAAGGAATGCGAGCTTTGATTCTAGTAGGCGGTTATGGCACACGTTTGAGACCA
TTGACTTTAAGTCGTCCAAAGCCTCTCGTTGAATTTGCTAATAAACCTATATTATTACAT
CAAATTGAAGCATTGCGTGAAGCTGGTGTTAAAGAAGTAATATTAGCTGTATCTTACAGA
GCTGACGAAATGGAACGAGAATTGAAACAAGAAACAGAAAAGTTGGGTGTCAATTTGATA
TTTTCACATGAAACTGAACCACTCGGAACCGCAGGTCCTCTTGCTTTAGCTAAAGATATC
CTTTTGAAGAGCCCAGAACCGTTTTTTGTACTAAATTCAGATGTAATTTGTGACTTTCCA
TTTCAAGAGTTAGCAAAATTTCATCGAAATCATCAAAAGGAAGGTACTATTGTTGTCACT
AAAGTGGAAGAACCTTCAAAATATGGTGTAGTTTTATACGACAATAATGGTTGTATTAAG
AGTTTTATTGAGAAACCGCAAGAGTTTGTCAGCAATAAAATCAATGCTGGCATGTATATT
TTAAATCCATCTGTATTGTCTCGGATTCAATTGAAGCCAACATCTATCGAAAAAGAAATT
TTTCCTCTAATGTCCGAAGAGAATGAACTGTATGCATTTGAACTTAATGGCTTTTGGATG
GATATTGGACAACCTAAAGACTTTCTTACTGGAATGTGTTTATATCTTAATGCTTTGCGT
CATCGTGAGCCTTCACTTTTGTATAACGACGAAGGCGTCGTAGGAAATGTATTAGTTGAT
CCTTCTGCAAAAATTGGCAAAGGTTGCCGAATAGGACCAAATGTCACTATCGGTCCTAAT
TGCGTCATAG

>g11767.t24 Gene=g11767 Length=285
MTEEQGMRALILVGGYGTRLRPLTLSRPKPLVEFANKPILLHQIEALREAGVKEVILAVS
YRADEMERELKQETEKLGVNLIFSHETEPLGTAGPLALAKDILLKSPEPFFVLNSDVICD
FPFQELAKFHRNHQKEGTIVVTKVEEPSKYGVVLYDNNGCIKSFIEKPQEFVSNKINAGM
YILNPSVLSRIQLKPTSIEKEIFPLMSEENELYAFELNGFWMDIGQPKDFLTGMCLYLNA
LRHREPSLLYNDEGVVGNVLVDPSAKIGKGCRIGPNVTIGPNCVI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g11767.t24 CDD cd06425 M1P_guanylylT_B_like_N 7 238 0.0e+00
6 g11767.t24 Gene3D G3DSA:3.90.550.10 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 240 0.0e+00
7 g11767.t24 Gene3D G3DSA:2.160.10.10 Hexapeptide repeat proteins 250 285 3.1e-05
3 g11767.t24 PANTHER PTHR22572:SF15 MANNOSE-1-PHOSPHATE GUANYLTRANSFERASE BETA 7 285 0.0e+00
4 g11767.t24 PANTHER PTHR22572 SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 7 285 0.0e+00
2 g11767.t24 Pfam PF00483 Nucleotidyl transferase 9 234 0.0e+00
1 g11767.t24 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 258 285 6.0e-07
5 g11767.t24 SUPERFAMILY SSF53448 Nucleotide-diphospho-sugar transferases 6 284 0.0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0009058 biosynthetic process BP
GO:0016779 nucleotidyltransferase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed