General information for g11771.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11771 is located on chr_1: 18356402..18359119 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11771 | g11771.t9 | isoform | g11771.t9 | 18356402 | 18358731 |
| chr_1 | g11771 | g11771.t9 | exon | g11771.t9.exon1 | 18356402 | 18356923 |
| chr_1 | g11771 | g11771.t9 | cds | g11771.t9.CDS1 | 18356403 | 18356923 |
| chr_1 | g11771 | g11771.t9 | exon | g11771.t9.exon2 | 18356996 | 18357411 |
| chr_1 | g11771 | g11771.t9 | cds | g11771.t9.CDS2 | 18356996 | 18357185 |
| chr_1 | g11771 | g11771.t9 | exon | g11771.t9.exon3 | 18358633 | 18358731 |
| chr_1 | g11771 | g11771.t9 | TSS | g11771.t9 | 18358762 | 18358762 |
| chr_1 | g11771 | g11771.t9 | TTS | g11771.t9 | NA | NA |
Sequences
>g11771.t9 Gene=g11771 Length=1037
GGTGAGAAGTGTTCTCCATTATTTTTTAAATTTAAAATAGGAAAAGTCTTTCGTATTCAG
TCATAATTATTAAAATTTTATAAGTGTTCATAATAACAATTTTTCATTACTTTTGAATCA
ATCAAATAAAAAAGAAATAGAACTGAAAAATAGGAGTGAAAAAGTGTTAAAGGAGTGAAC
ATTTGTGATAAAAATCGTCAAAAGTGAATTTTTTTTTATAAATTTAAACATCTATAATTA
AAAAAAAATTGGTGAATTTCTCAAATACGGGGAATAAAGGGAATGTTTTTAATGGCAATC
AGCAATATTGGAAGAAGTGTCGTCTATGGCCGAATCTGGTAATAAAAAATTGCTCTCTGC
ATTGACGGAGGGGCATGACAAAGAATTGAGATCATCGGCAAGAATAGTAAAATCATCAGT
AGAGAAAGAGAAAAATACATTATCTATAAACAGTGGAAGCAATAATAAATCTTTGTCATC
AAAAACACAAAAAAAAGTAGTTGGTGGCTCTAAATATAATAAAAATAAATCTTTAAGATC
TGAAAATACAGTTCAACCATCAAATAGTAATACATCAAGTCGAAAACGTTTTTTGAATAT
TTTGTTGAATTCAAACAGCTCAACAGAAGAAGATAGTGAAGAAGAATCTACTGTAACCAC
TGTCAAAAAAGCAAGACGTCGGCGAAGAAATTTCTCAAGTTCTACATCATCTTCTTATAC
ATCGTCATCACTTACAACAAATTCAAATTCAAATAATATTGGAAATATCACTTCTTCTTC
AACTCAACAACAATTAAAATCACAATTGTCTATAGCATATCATACTCGATCAAGAACACA
GTCTGTTGAACACAACGAAATAGATTCTCCATCTAAAAACGATACTAAACGTTCTAGAGG
ATCAGCAAAAAAAATTGGAAATAGTGATAGAGAAGAGTGCAAATCAAGCTTTGAAGAATT
AGTAAATAGTGTAAAGAAGCCAAAAGAAAATATTAAGAAAACGGAAGTTGATCATACAAC
TGAAAATTCACAAAAAA
>g11771.t9 Gene=g11771 Length=237
MAESGNKKLLSALTEGHDKELRSSARIVKSSVEKEKNTLSINSGSNNKSLSSKTQKKVVG
GSKYNKNKSLRSENTVQPSNSNTSSRKRFLNILLNSNSSTEEDSEEESTVTTVKKARRRR
RNFSSSTSSSYTSSSLTTNSNSNNIGNITSSSTQQQLKSQLSIAYHTRSRTQSVEHNEID
SPSKNDTKRSRGSAKKIGNSDREECKSSFEELVNSVKKPKENIKKTEVDHTTENSQK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g11771.t9 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 138 | - |
| 2 | g11771.t9 | MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 33 | - |
| 1 | g11771.t9 | MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 99 | - |
| 6 | g11771.t9 | MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 138 | - |
| 3 | g11771.t9 | MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 237 | - |
| 5 | g11771.t9 | MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 237 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
