Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative G-protein coupled receptor moody.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11785 g11785.t4 isoform g11785.t4 18402157 18407448
chr_1 g11785 g11785.t4 exon g11785.t4.exon1 18402157 18402172
chr_1 g11785 g11785.t4 cds g11785.t4.CDS1 18402159 18402172
chr_1 g11785 g11785.t4 exon g11785.t4.exon2 18402236 18402441
chr_1 g11785 g11785.t4 cds g11785.t4.CDS2 18402236 18402441
chr_1 g11785 g11785.t4 exon g11785.t4.exon3 18402810 18402933
chr_1 g11785 g11785.t4 cds g11785.t4.CDS3 18402810 18402933
chr_1 g11785 g11785.t4 exon g11785.t4.exon4 18403166 18403240
chr_1 g11785 g11785.t4 cds g11785.t4.CDS4 18403166 18403240
chr_1 g11785 g11785.t4 exon g11785.t4.exon5 18403321 18403360
chr_1 g11785 g11785.t4 cds g11785.t4.CDS5 18403321 18403360
chr_1 g11785 g11785.t4 exon g11785.t4.exon6 18405148 18405284
chr_1 g11785 g11785.t4 cds g11785.t4.CDS6 18405148 18405284
chr_1 g11785 g11785.t4 exon g11785.t4.exon7 18405350 18405597
chr_1 g11785 g11785.t4 cds g11785.t4.CDS7 18405350 18405455
chr_1 g11785 g11785.t4 exon g11785.t4.exon8 18407073 18407448
chr_1 g11785 g11785.t4 TSS g11785.t4 18407455 18407455
chr_1 g11785 g11785.t4 TTS g11785.t4 NA NA

Sequences

>g11785.t4 Gene=g11785 Length=1222
GCTTCGACATCGTGCGGTACACACGTAAAAAATAAAATCTATAAAGTTGATGATTGTTTA
ATTGCCTAGAAATATTTTGTTTGATAAGAATGAGCGGGAAATAATATTTGACGTTAAGTT
CTTATCAATTTTTAAACAGTAATTGAGTGATTTGTTTGAATTTGTTGAAATAATTTTTTG
CATTTTTGTTCGAAATATCTAAATTTTGGCTTATGAGCTTTAAAATTATGTACTATTTGT
ACATTTAATTTATATAGTGAGTGAAAATGCTATAAAAGACGATGAGTAAAATTTTTTAGT
GTTCAATACACATGTGAATAAATAATTGTTTAAAAAATATAGACAAAAATAGATTTAACT
TTCATTTAAAAAATCTAACCTGGATTAAAATCTAAACTTTGTAAGCTGCATAAACACATG
AAGTTTGAATTCATTGATTTGCTCCCAAAAATTTTTCAATGATCATATTCAAACTACCAA
AGAAAACAACTTTAAATTTATTTAAAAAATATTAAGGAATGGATCTTCTACCATTTGTGC
CTGATTCAAGTGAAGATGATCATATTATTACTAACTACAGTTTTAGTTCTTTTGGAATAT
CATCTGTTAGTGAATTTAAAACATCTAATCCATATGAAAACTTGTTCAAAGGATTTTCTC
CTCTTTTACTTTATTTTGCTTCAACTTGCTGTTTTCTATTTATGCTTCTTGGAATACCAG
GAAATCTCTTCACAATTATAGCGTTAGCAAAATGTAAAAAAGTTAGAAATGCTACAGCAG
TTTTTATCATAAATTTATCATGTTCAGATTTACTATTTTGTTGCTTTAATCTTCCACTTG
CGGCTACCACATTTTACTACAGAGAATGGGTTCATGGTGAATTAATGTGTCGTCTTTATC
CATTATTACGTTATGGACTTCTAGCTGTATCTTTATTTTCGATTTTAACAATAACAATTA
ATCGTTATATAATGATTGGACATCCTCGCGCTTATCCACGCATCTACAGACGACGTTGGT
TAATACTTATGGTTTCATTGACTTGGATATGTTCGTTTGGCACGTTGATTCAAACATGGC
GAGGCAAATGGGGTAAATTTGGGATGGATACAACTATTGGAAGTTGTAGTATACTTCCTG
TTGACTCAAGATCTCCTAAAGAGTTCTTATTTGTAATGGCCTTCATTCTTCCATGTTTTG
CAATAGTTCTTTGCTATGCACG

>g11785.t4 Gene=g11785 Length=234
MDLLPFVPDSSEDDHIITNYSFSSFGISSVSEFKTSNPYENLFKGFSPLLLYFASTCCFL
FMLLGIPGNLFTIIALAKCKKVRNATAVFIINLSCSDLLFCCFNLPLAATTFYYREWVHG
ELMCRLYPLLRYGLLAVSLFSILTITINRYIMIGHPRAYPRIYRRRWLILMVSLTWICSF
GTLIQTWRGKWGKFGMDTTIGSCSILPVDSRSPKEFLFVMAFILPCFAIVLCYA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g11785.t4 Gene3D G3DSA:1.20.1070.10 - 30 234 1.2E-41
2 g11785.t4 PANTHER PTHR24228:SF62 AGAP001498-PA 40 234 2.2E-107
3 g11785.t4 PANTHER PTHR24228 B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR 40 234 2.2E-107
7 g11785.t4 PRINTS PR00237 Rhodopsin-like GPCR superfamily signature 53 77 4.3E-17
6 g11785.t4 PRINTS PR00237 Rhodopsin-like GPCR superfamily signature 86 107 4.3E-17
5 g11785.t4 PRINTS PR00237 Rhodopsin-like GPCR superfamily signature 131 153 4.3E-17
4 g11785.t4 PRINTS PR00237 Rhodopsin-like GPCR superfamily signature 214 234 4.3E-17
1 g11785.t4 Pfam PF00001 7 transmembrane receptor (rhodopsin family) 68 234 2.3E-32
13 g11785.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 48 -
20 g11785.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 49 77 -
11 g11785.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 78 88 -
18 g11785.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 89 109 -
15 g11785.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 110 128 -
17 g11785.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 129 147 -
10 g11785.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 148 166 -
16 g11785.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 167 187 -
14 g11785.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 188 215 -
19 g11785.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 216 233 -
12 g11785.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 234 234 -
26 g11785.t4 ProSitePatterns PS00237 G-protein coupled receptors family 1 signature. 137 153 -
27 g11785.t4 ProSiteProfiles PS50262 G-protein coupled receptors family 1 profile. 68 234 26.33
8 g11785.t4 SUPERFAMILY SSF81321 Family A G protein-coupled receptor-like 47 234 4.85E-33
24 g11785.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 52 74 -
22 g11785.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 87 109 -
25 g11785.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 129 151 -
21 g11785.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 167 189 -
23 g11785.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 216 233 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0007186 G protein-coupled receptor signaling pathway BP
GO:0016021 integral component of membrane CC
GO:0004930 G protein-coupled receptor activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values