General information for g11786.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Luciferin 4-monooxygenase.
Parent gene
- The parent gene g11786 is located on chr_1: 18413562..18419558 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11786 | g11786.t1 | isoform | g11786.t1 | 18413562 | 18415374 |
| chr_1 | g11786 | g11786.t1 | exon | g11786.t1.exon1 | 18413562 | 18414657 |
| chr_1 | g11786 | g11786.t1 | cds | g11786.t1.CDS1 | 18413562 | 18414657 |
| chr_1 | g11786 | g11786.t1 | exon | g11786.t1.exon2 | 18414851 | 18415374 |
| chr_1 | g11786 | g11786.t1 | cds | g11786.t1.CDS2 | 18414851 | 18415374 |
| chr_1 | g11786 | g11786.t1 | TSS | g11786.t1 | 18415404 | 18415404 |
| chr_1 | g11786 | g11786.t1 | TTS | g11786.t1 | NA | NA |
Sequences
>g11786.t1 Gene=g11786 Length=1620
ATGGTTCATTATGATCCAATAACAAGAATTTTACATGGCCCAAAACTGCCACAGGTCTAT
AGCTCAAATGTAACACTTGGTCAAGTGATATTAAAAAAACTTTATAAAACACCTGACAAG
GTGATACAAGTGTGTGATGATGATGGAATAGAATTAACGTGCTCTCAAATGACAAAATAC
ATGATAAATATAGCTAAAAACCTTTCAAAACTTGGTTTTCAAAGTGGTGATATTGCTGGT
CTTCTAGCTGTTTGGAGCACTTATACAGCTCCTACTATTTTTGCTTGCTCCCTACTTTCT
ATGCCATTAAATCCAATAGATACATCGTTTAGTGTGAATCAAATTGTTCATATTTATAGA
CAAACACAACCAAAAATTGTATTTTGTGATCACGATGTGATTGATAAATTAATGGCAGCA
TTAGGCATTCTTGAGAGCGAAGCAACAATTGTTATTTTAACGGAGCGTATCAATGGATTA
TTACATGTCAGTGATTTACTACACGATTGTGATGTGAGTGATGACTTTATTTATCAAACA
CACTCGAATGAGAAGTGCTCTCTTATCATTTGCACATCGGGAAGTTCGGGAAATCCAAAA
CTAGCATGTTTAACACATTTACAACAACTTCAAAATTTTACATGGATTAATAACTTCAAC
CCAGATTTTTTTTCATTCAATATGACAAGTCCATATTGGTTAAGTGGACTTAATTGTATG
ATATTTCAGTTTTTACATGGTCGTAAAAGACTGATAACTTCAAAACCATATACTCCAGAA
ACTTTTTTGAATTTGATTGAAAAGTATAAAATCAACGATACTTTTTTAGTTCCTCCACTT
TTGTCTTTACTTATTGATACACCAAGATTTAAAGAAGCCGATCTTAGTTCAATTAAATAT
TTTGTAACTGGAGGCCTTTATGTATCAGAAAATTTAAGGATCGTAGTTCAACAAAAACTA
ATAAATGGAAAAATTAAAATTGGATATGGTATGACAGAATTTGGAGGACTTCTTGCTGAA
ACGCAAGATGAATTTCATTTAGGAACATCAGTTGGATATCCAACACACAATACTGAAGTG
AAAATTCAACTTGATGATGGAACTTCTGGTGGTATATCAGAAATTGGAGAAATTTTAGTA
CGCCATCCAGTTCGATTTCTTGGTTACTATAAAAATTGTCATAAAAACATTATTGATGAC
GAAGGTTGGTTGCATACAAGTGACATGGGATTTATTGATAAATATCATGAAATAAATATT
ATTGGTCAGCGAATATTTGCTATAAAAAGTTTCTATAATGAATTCTTTCCAAGTGAAGTA
GAAGAAATTATTGAAGCAGTTGATGGTGTAAAGCAAGTTGTAATTGTCGGAACACCGGAT
CCAGTTGATATTGAAAAAACTACAGCTCTTATAGTGAAAGAACCAAATAGTAATGTTACA
GAAGACTTAATATATGAAGCGACAAGCACTCTACCTATTTATAAACAGCCTCGAGGAGGA
ATATTTTTTCTAGACAATCTACCACTTACTTCGACTGGAAAAATCAAACGAAAAGAGGCA
AAGGAGCTTGCTAAAAAGCTCACTTTTGAAAGAAATAATCATAATGATTTACCTGCTTAG
>g11786.t1 Gene=g11786 Length=539
MVHYDPITRILHGPKLPQVYSSNVTLGQVILKKLYKTPDKVIQVCDDDGIELTCSQMTKY
MINIAKNLSKLGFQSGDIAGLLAVWSTYTAPTIFACSLLSMPLNPIDTSFSVNQIVHIYR
QTQPKIVFCDHDVIDKLMAALGILESEATIVILTERINGLLHVSDLLHDCDVSDDFIYQT
HSNEKCSLIICTSGSSGNPKLACLTHLQQLQNFTWINNFNPDFFSFNMTSPYWLSGLNCM
IFQFLHGRKRLITSKPYTPETFLNLIEKYKINDTFLVPPLLSLLIDTPRFKEADLSSIKY
FVTGGLYVSENLRIVVQQKLINGKIKIGYGMTEFGGLLAETQDEFHLGTSVGYPTHNTEV
KIQLDDGTSGGISEIGEILVRHPVRFLGYYKNCHKNIIDDEGWLHTSDMGFIDKYHEINI
IGQRIFAIKSFYNEFFPSEVEEIIEAVDGVKQVVIVGTPDPVDIEKTTALIVKEPNSNVT
EDLIYEATSTLPIYKQPRGGIFFLDNLPLTSTGKIKRKEAKELAKKLTFERNNHNDLPA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g11786.t1 | Gene3D | G3DSA:3.40.50.12780 | - | 8 | 421 | 8.6E-81 |
| 8 | g11786.t1 | Gene3D | G3DSA:3.30.300.30 | - | 422 | 529 | 3.7E-18 |
| 3 | g11786.t1 | PANTHER | PTHR24096:SF353 | GH16244P-RELATED | 3 | 526 | 8.9E-110 |
| 4 | g11786.t1 | PANTHER | PTHR24096 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 3 | 526 | 8.9E-110 |
| 2 | g11786.t1 | Pfam | PF00501 | AMP-binding enzyme | 35 | 424 | 1.7E-53 |
| 1 | g11786.t1 | Pfam | PF13193 | AMP-binding enzyme C-terminal domain | 439 | 514 | 1.1E-10 |
| 6 | g11786.t1 | ProSitePatterns | PS00455 | Putative AMP-binding domain signature. | 189 | 200 | - |
| 5 | g11786.t1 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 22 | 527 | 4.45E-90 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
