General information for g11786.t39
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11786 is located on chr_1: 18413562..18419558 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11786 | g11786.t39 | isoform | g11786.t39 | 18413378 | 18414074 |
| chr_1 | g11786 | g11786.t39 | exon | g11786.t39.exon1 | 18413378 | 18414074 |
| chr_1 | g11786 | g11786.t39 | cds | g11786.t39.CDS1 | 18413562 | 18413957 |
| chr_1 | g11786 | g11786.t39 | TSS | g11786.t39 | NA | NA |
| chr_1 | g11786 | g11786.t39 | TTS | g11786.t39 | NA | NA |
Sequences
>g11786.t39 Gene=g11786 Length=697
GGTGGTATATCAGAAATTGGAGAAATTTTAGTACGCCATCCAGTTCGATTTCTTGGTTAC
TATAAAAATTGTCATAAAAACATTATTGATGACGAAGGTTGGTTGCATACAAGTGACATG
GGATTTATTGATAAATATCATGAAATAAATATTATTGGTCAGCGAATATTTGCTATAAAA
AGTTTCTATAATGAATTCTTTCCAAGTGAAGTAGAAGAAATTATTGAAGCAGTTGATGGT
GTAAAGCAAGTTGTAATTGTCGGAACACCGGATCCAGTTGATATTGAAAAAACTACAGCT
CTTATAGTGAAAGAACCAAATAGTAATGTTACAGAAGACTTAATATATGAAGCGACAAGC
ACTCTACCTATTTATAAACAGCCTCGAGGAGGAATATTTTTTCTAGACAATCTACCACTT
ACTTCGACTGGAAAAATCAAACGAAAAGAGGCAAAGGAGCTTGCTAAAAAGCTCACTTTT
GAAAGAAATAATCATAATGATTTACCTGCTTAGCTCGTCTGTTTCTTCATCATTGCTCCT
ATACACCTCTGTCGAGTTTACGACTGTTTCAAATGTCGACAATGTTGTACTTAAAATGTC
ATTTGGATAATGATTCTCCCCATATTGTGCTCGAAATCCACTGTTATCTATACCAAAACG
ATTCATTTTTGCTTCAATAAGGTTCATATAACTGTAA
>g11786.t39 Gene=g11786 Length=131
MGFIDKYHEINIIGQRIFAIKSFYNEFFPSEVEEIIEAVDGVKQVVIVGTPDPVDIEKTT
ALIVKEPNSNVTEDLIYEATSTLPIYKQPRGGIFFLDNLPLTSTGKIKRKEAKELAKKLT
FERNNHNDLPA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g11786.t39 | Gene3D | G3DSA:3.30.300.30 | - | 10 | 121 | 0 |
| 2 | g11786.t39 | PANTHER | PTHR24096:SF353 | GH16244P-RELATED | 26 | 118 | 0 |
| 3 | g11786.t39 | PANTHER | PTHR24096 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 26 | 118 | 0 |
| 1 | g11786.t39 | Pfam | PF13193 | AMP-binding enzyme C-terminal domain | 31 | 106 | 0 |
| 4 | g11786.t39 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 28 | 119 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
