Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Actin-related protein 2/3 complex subunit 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11813 g11813.t61 TTS g11813.t61 18530103 18530103
chr_1 g11813 g11813.t61 isoform g11813.t61 18530269 18534273
chr_1 g11813 g11813.t61 exon g11813.t61.exon1 18530269 18530617
chr_1 g11813 g11813.t61 cds g11813.t61.CDS1 18530269 18530496
chr_1 g11813 g11813.t61 exon g11813.t61.exon2 18534246 18534273
chr_1 g11813 g11813.t61 TSS g11813.t61 NA NA

Sequences

>g11813.t61 Gene=g11813 Length=377
AATATCATAGATTCACAATTTTTGCCAGCTCTCGTAATGAAAAAGAGCGAGTATTGATTG
AGACAAGTGTAAATTCTGTTCGTATCAGTATTTCAATTAAACAAGCAGATGAAATTGAAA
AGATTCTTTGCCACAAATTTACTCGATTTATGATGATGAGAGCAGAGAGTTTTGTAATAT
TGAGAAGAAAACCAATTGAAGGATATGACATTTCATTTCTTATTACTAATTTTCATACAG
AACAAATGTTTAAGCATAAATTAGTTGATTTTGTTATTCATTTTATAGAAGAAGTTGATA
AAGAGATAAGTGAACTCAAGCTTTCTGTGAATAGCCGAGCTCGTATTTGTGCGGAAGAAT
TTTTAAAACGATTCTAA

>g11813.t61 Gene=g11813 Length=75
MMMRAESFVILRRKPIEGYDISFLITNFHTEQMFKHKLVDFVIHFIEEVDKEISELKLSV
NSRARICAEEFLKRF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g11813.t61 Gene3D G3DSA:3.30.1460.20 - 1 75 0
2 g11813.t61 PANTHER PTHR22629 ARP2/3 COMPLEX 20 KD SUBUNIT 1 75 0
3 g11813.t61 PANTHER PTHR22629:SF1 ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 4 1 75 0
1 g11813.t61 Pfam PF05856 ARP2/3 complex 20 kDa subunit (ARPC4) 1 73 0
4 g11813.t61 SUPERFAMILY SSF69645 Arp2/3 complex subunits 1 75 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0030833 regulation of actin filament polymerization BP
GO:0005885 Arp2/3 protein complex CC
GO:0034314 Arp2/3 complex-mediated actin nucleation BP
GO:0015629 actin cytoskeleton CC
GO:0030041 actin filament polymerization BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed