General information for g11822.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Ubiquitin-conjugating enzyme E2 Q1.
Parent gene
- The parent gene g11822 is located on chr_1: 18586869..18588999 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11822 | g11822.t2 | TSS | g11822.t2 | 18584731 | 18584731 |
| chr_1 | g11822 | g11822.t2 | isoform | g11822.t2 | 18584928 | 18586869 |
| chr_1 | g11822 | g11822.t2 | exon | g11822.t2.exon1 | 18584928 | 18585089 |
| chr_1 | g11822 | g11822.t2 | exon | g11822.t2.exon2 | 18585541 | 18585657 |
| chr_1 | g11822 | g11822.t2 | exon | g11822.t2.exon3 | 18585725 | 18586058 |
| chr_1 | g11822 | g11822.t2 | cds | g11822.t2.CDS1 | 18585804 | 18586058 |
| chr_1 | g11822 | g11822.t2 | exon | g11822.t2.exon4 | 18586118 | 18586409 |
| chr_1 | g11822 | g11822.t2 | cds | g11822.t2.CDS2 | 18586118 | 18586409 |
| chr_1 | g11822 | g11822.t2 | exon | g11822.t2.exon5 | 18586495 | 18586620 |
| chr_1 | g11822 | g11822.t2 | cds | g11822.t2.CDS3 | 18586495 | 18586620 |
| chr_1 | g11822 | g11822.t2 | exon | g11822.t2.exon6 | 18586706 | 18586772 |
| chr_1 | g11822 | g11822.t2 | cds | g11822.t2.CDS4 | 18586706 | 18586716 |
| chr_1 | g11822 | g11822.t2 | exon | g11822.t2.exon7 | 18586838 | 18586869 |
| chr_1 | g11822 | g11822.t2 | TTS | g11822.t2 | 18587241 | 18587241 |
Sequences
>g11822.t2 Gene=g11822 Length=1130
ATGGCATGTTTGAATAATTTAAAGTCAGAAATAAAGACACTAGAAAAGCTATTTCCTAAA
AGCCATGAAAGATTTGCTATAATAAACGCTAGTGTAGATGAATTAACGTGTCGATTTATT
ACAAAAAGTGGCAAAAAATTTGATATTCATGCAAATATTACGGAGACATACCCTACCACT
CCTCCGGTTTGGTTTGCTGATATTGAAGAACCTAATATAACGAATGCAATTCAATTACTT
AGCAATACAAGTGGACTAGATAACCACGTTATTAATCAAAATATTATTAGGAGAATTGTG
CACTATTCACTCCTGTCCTCTTCCGATTGAGGTTCATCAACTCAACACGTTCCATTCGAT
GCCCACTAGTTCAACTCACAATCATAGTTTGAACAATGGAAAAACTCCAGCAAAAAATCA
TCAAGACGAAATTGATACTGATCCAGAAGATCTAGAAGATGCTGTTGGTGAAAGCGAAGA
TTCAGATGCTGAAGAAGATTTACCTCTGGAATTAGACGATGGACGCAGTGCCAGTAAAAA
AGATGAAATGGAAGTAGAACATTTAGCGACATTGGAGAGATTAAGACAAACACAGAGACA
AGACTATTTAAGGGGTTCTGTATCGGGAAGCGTTCAAGCAACTGATCGACTGATGAAAGA
GTTGCGAGATATTTATCGCTCAGATTCTTTTAAAAGGAATATTTATTCGATTGAATTAGT
TAATGATTCAATATATGAGTGGAATATTCGGCTTATGTCCGTTGATCCAGATAGTCCTCT
TCACAATGATCTGCTTATGCTTAAAGAAAAAGAAGGAAAAGATAGCATTCTTTTGAATAT
CATATTTAAAGAAACTTATCCTTTTGAACCACCTTTTGTTCGCGTTGTTCATCCAATTAT
ATCAGGCGGATATGTTTTATTAGGCGGTGCAATTTGCATGGAACTTTTGACGAAACAGGG
GTGGAGCTCAGCTTACACAGTAGAAGCTCTGATAATGCAAATTTCAGCAACTTTAGTGAA
AGGAAAGGCGCGGTCAATATAGTTTGGCACGTGCACAGCAAAGCTTTAAGTCATTGGTCC
AGATACATGAGAAAAACGGATGGTTTACTCCTCCAAAAGAAGATGGATAA
>g11822.t2 Gene=g11822 Length=227
MPTSSTHNHSLNNGKTPAKNHQDEIDTDPEDLEDAVGESEDSDAEEDLPLELDDGRSASK
KDEMEVEHLATLERLRQTQRQDYLRGSVSGSVQATDRLMKELRDIYRSDSFKRNIYSIEL
VNDSIYEWNIRLMSVDPDSPLHNDLLMLKEKEGKDSILLNIIFKETYPFEPPFVRVVHPI
ISGGYVLLGGAICMELLTKQGWSSAYTVEALIMQISATLVKGKARSI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11822.t2 | CDD | cd00195 | UBCc | 95 | 220 | 4.16378E-29 |
| 5 | g11822.t2 | Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 88 | 227 | 5.9E-48 |
| 8 | g11822.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 64 | - |
| 9 | g11822.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - |
| 10 | g11822.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 50 | - |
| 2 | g11822.t2 | PANTHER | PTHR24068:SF56 | UBIQUITIN-CONJUGATING ENZYME E2 Q1 | 35 | 225 | 2.0E-83 |
| 3 | g11822.t2 | PANTHER | PTHR24068 | UBIQUITIN-CONJUGATING ENZYME E2 | 35 | 225 | 2.0E-83 |
| 1 | g11822.t2 | Pfam | PF00179 | Ubiquitin-conjugating enzyme | 98 | 219 | 6.1E-9 |
| 11 | g11822.t2 | ProSiteProfiles | PS50127 | Ubiquitin-conjugating enzymes family profile. | 96 | 227 | 14.16 |
| 7 | g11822.t2 | SMART | SM00212 | ubc_7 | 96 | 225 | 0.0065 |
| 4 | g11822.t2 | SUPERFAMILY | SSF54495 | UBC-like | 91 | 223 | 2.89E-32 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed