General information for g11822.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Ubiquitin-conjugating enzyme E2 Q2.
Parent gene
- The parent gene g11822 is located on chr_1: 18586869..18588999 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11822 | g11822.t3 | TSS | g11822.t3 | 18584731 | 18584731 |
| chr_1 | g11822 | g11822.t3 | isoform | g11822.t3 | 18584928 | 18586869 |
| chr_1 | g11822 | g11822.t3 | exon | g11822.t3.exon1 | 18584928 | 18585089 |
| chr_1 | g11822 | g11822.t3 | cds | g11822.t3.CDS1 | 18584928 | 18585089 |
| chr_1 | g11822 | g11822.t3 | exon | g11822.t3.exon2 | 18585541 | 18585657 |
| chr_1 | g11822 | g11822.t3 | cds | g11822.t3.CDS2 | 18585541 | 18585657 |
| chr_1 | g11822 | g11822.t3 | exon | g11822.t3.exon3 | 18585720 | 18586058 |
| chr_1 | g11822 | g11822.t3 | cds | g11822.t3.CDS3 | 18585720 | 18586058 |
| chr_1 | g11822 | g11822.t3 | exon | g11822.t3.exon4 | 18586118 | 18586643 |
| chr_1 | g11822 | g11822.t3 | cds | g11822.t3.CDS4 | 18586118 | 18586441 |
| chr_1 | g11822 | g11822.t3 | exon | g11822.t3.exon5 | 18586706 | 18586772 |
| chr_1 | g11822 | g11822.t3 | exon | g11822.t3.exon6 | 18586838 | 18586869 |
| chr_1 | g11822 | g11822.t3 | TTS | g11822.t3 | 18587241 | 18587241 |
Sequences
>g11822.t3 Gene=g11822 Length=1243
ATGGCATGTTTGAATAATTTAAAGTCAGAAATAAAGACACTAGAAAAGCTATTTCCTAAA
AGCCATGAAAGATTTGCTATAATAAACGCTAGTGTAGATGAATTAACGTGTCGATTTATT
ACAAAAAGTGGCAAAAAATTTGATATTCATGCAAATATTACGGAGACATACCCTACCACT
CCTCCGGTTTGGTTTGCTGATATTGAAGAACCTAATATAACGAATGCAATTCAATTACTT
AGCAATACAAGTGGACTAGATAACCACGTTATTAATCAAGCTAGAATATTATTAGGAGAA
TTGTGCACTATTCACTCCTGTCCTCTTCCGATTGAGGTTCATCAACTCAACACGTTCCAT
TCGATGCCCACTAGTTCAACTCACAATCATAGTTTGAACAATGGAAAAACTCCAGCAAAA
AATCATCAAGACGAAATTGATACTGATCCAGAAGATCTAGAAGATGCTGTTGGTGAAAGC
GAAGATTCAGATGCTGAAGAAGATTTACCTCTGGAATTAGACGATGGACGCAGTGCCAGT
AAAAAAGATGAAATGGAAGTAGAACATTTAGCGACATTGGAGAGATTAAGACAAACACAG
AGACAAGACTATTTAAGGGGTTCTGTATCGGGAAGCGTTCAAGCAACTGATCGACTGATG
AAAGAGTTGCGAGATATTTATCGCTCAGATTCTTTTAAAAGGAATATTTATTCGATTGAA
TTAGTTAATGATTCAATATATGAGTGGAATATTCGGCTTATGTCCGTTGATCCAGATAGT
CCTCTTCACAATGATCTGCTTATGCTTAAAGAAAAAGAAGGAAAAGATAGCATTCTTTTG
AATATCATATTTAAAGAAACTTATCCTTTTGAACCACCTTTTGTTCGCGTTGTTCATCCA
ATTATATCAGGTAAATTCTTAAAAATTAGTTCATCATATTAACTTACCTAAAAAAATCTT
TTTGTTTTAATTTATTTTGTTACTTTTTGACAAAGGCGGATATGTTTTATTAGGCGGTGC
AATTTGCATGGAACTTTTGACGAAACAGGGGTGGAGCTCAGCTTACACAGTAGAAGCTCT
GATAATGCAAATTTCAGCAACTTTAGTGAAAGGAAAGGCGCGTATTCAATTTGGGGCAAC
AAAGGGTCAATATAGTTTGGCACGTGCACAGCAAAGCTTTAAGTCATTGGTCCAGATACA
TGAGAAAAACGGATGGTTTACTCCTCCAAAAGAAGATGGATAA
>g11822.t3 Gene=g11822 Length=313
MACLNNLKSEIKTLEKLFPKSHERFAIINASVDELTCRFITKSGKKFDIHANITETYPTT
PPVWFADIEEPNITNAIQLLSNTSGLDNHVINQARILLGELCTIHSCPLPIEVHQLNTFH
SMPTSSTHNHSLNNGKTPAKNHQDEIDTDPEDLEDAVGESEDSDAEEDLPLELDDGRSAS
KKDEMEVEHLATLERLRQTQRQDYLRGSVSGSVQATDRLMKELRDIYRSDSFKRNIYSIE
LVNDSIYEWNIRLMSVDPDSPLHNDLLMLKEKEGKDSILLNIIFKETYPFEPPFVRVVHP
IISGKFLKISSSY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11822.t3 | Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 209 | 311 | 3.5E-29 |
| 4 | g11822.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 171 | - |
| 5 | g11822.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 185 | - |
| 1 | g11822.t3 | PANTHER | PTHR24068:SF56 | UBIQUITIN-CONJUGATING ENZYME E2 Q1 | 120 | 304 | 1.5E-50 |
| 2 | g11822.t3 | PANTHER | PTHR24068 | UBIQUITIN-CONJUGATING ENZYME E2 | 120 | 304 | 1.5E-50 |
| 3 | g11822.t3 | SUPERFAMILY | SSF54495 | UBC-like | 212 | 302 | 2.75E-19 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
